PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G076600.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 596aa    MW: 64945.7 Da    PI: 6.3733
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G076600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.69.2e-13381427455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h   ErrRR+++N++f  Lr+l+P       +K++ a+iL  ++eY+k+L+
  Sobic.002G076600.2.p 381 SHVLKERRRREKLNERFVMLRSLVPFV-----TKMDRASILGDTIEYVKQLR 427
                           79999*********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.3E-124889IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.672377426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-18380450IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-10381426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.49E-14381431No hitNo description
Gene3DG3DSA:4.10.280.101.3E-17381440IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-16383432IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MSMKLKLYID IPKVLLPSLP HDRELKVLIN SPFVTLFMWS ITNICGNKYQ SAGIQTVACI  60
PVNDGVLEIG TTEKVEEDIG LIQYARSIFM DQIGAHIMPT LSGHSTSTAP TTHINHQPFQ  120
TKMGCIGDIN VQKTSHNSGD EHHNEMEDDG DVRIDLLQTN TGNDSSRHSP QDTNVGNEQG  180
TLNAGSSELM LTGTSERVRD GCSKQEDEEI PVLMVCQNNG NLVAQDEFGP WHDFVDEDLS  240
SKYLQSSAAE DQAVLAENAH YVETVLAILR FNASRQTQAA SSNTKAYLAL SKNSSFSRWT  300
TSWNHKASNN DLQSMLIPDD EGAPQRLLKS ILLGAPSSSS HPSYKGADAA VHSSPEPRDD  360
GEGTSRSRRA PPVQPAELSA SHVLKERRRR EKLNERFVML RSLVPFVTKM DRASILGDTI  420
EYVKQLRRRI QELESSRGRL VDSNPRTTAM APPPPPPAAS TETTRRGHHT SGGYLARAGT  480
GTGTGTAAEA SASGSCCNSS VGEHEHHLAG DTEVQVSIIG SDALLELRCP HREGLLLRVM  540
QALHQELRLE VTSVQASSAG DVLLAELRAK VKEVHGRRSS ITEVKRAIHL IVSSD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1385390ERRRRE
2386391RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G076600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankZMU578992e-79U57899.1 Zea mays repressor-like protein (in1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021310268.10.0basic helix-loop-helix protein A
TrEMBLA0A1W0W2V50.0A0A1W0W2V5_SORBI; Uncharacterized protein
STRINGSb02g006390.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.12e-25bHLH family protein