PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.002G052800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | FAR1 | ||||||||
Protein Properties | Length: 692aa MW: 78793.9 Da PI: 6.0719 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 47.8 | 4.8e-15 | 70 | 146 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fYn ++ e+GF +r + + +++++++ vCs+egk+e +++ a+ +t+Cka++++++++d+ w++++++ +HnH+l Sobic.002G052800.1.p 70 DFYNLHSWELGFGIRCNMTVD----KSVVSQDIVCSCEGKPELSNT---------ASAQTDCKAMIRLHRSDDSCWYIQEFRGDHNHPL 145 6**************997554....589************999755.........599******************************9 PP FAR1 90 a 90 + Sobic.002G052800.1.p 146 S 146 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.4E-11 | 70 | 146 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 4.5E-27 | 261 | 354 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.792 | 544 | 580 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 0.0017 | 555 | 582 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 692 aa Download sequence Send to blast |
MAGGPGAGGG GGHGHGERFC RGSVPSERAP KRGGVSAYEQ SLKEYVDRMS IVVIRPSVGM 60 SFDSRAEAYD FYNLHSWELG FGIRCNMTVD KSVVSQDIVC SCEGKPELSN TASAQTDCKA 120 MIRLHRSDDS CWYIQEFRGD HNHPLSGICS ENFCWPSHNH LKPYTKNLVR RLRDDNVELS 180 KKCQSIYEYF WGMECKDISL DLSDIDSDKT IELFDDFGSL RRDDPSFMFC VELDDIDNQF 240 NTVLWTNGRS RTQYAHFGDT VTFDTTYRTN LYGLPFILFV GVNNHHQSIL LGGALMRRKT 300 VESFKWLFRE FVILMGGKAP STILTDRCHE MEVAIQEELP ETIHRWCKMH VLNNEHEFLG 360 PICLKMSGFK DDFQKIIDGM LTVREFECAW QHLLDKYNLH DNAFLSQIYD SRHKWANPYL 420 KEKFCTKQTS TQRNESAENM FKGYVPLNRS INMFVRHYNK LQSDLNSKES SEENRSRKRP 480 RFISKGLPIM EHAAKIYTRA MFEMFEGMIS QSGSYVVHEK EKGKAYLARN IRSDQQESWS 540 QVEFEVIIRA EDGAVVCECG FWEHMGMPCC HAVKVMIHMG MQEIPAGNIV KRWTMDARDT 600 VPVHLIGNDR AAENSKSYRT SELFIAGIKF VKSGSRSDQA FEGAMAVLDQ IKQELSELGE 660 DEDVSELSEQ SSISAATTDD ATSTLSGSET D* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.002G052800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002459424.2 | 0.0 | protein FAR1-RELATED SEQUENCE 8 | ||||
TrEMBL | A0A1W0W2F3 | 0.0 | A0A1W0W2F3_SORBI; Uncharacterized protein | ||||
STRING | Sb02g004433.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 | Representative plant | OGRP30 | 12 | 351 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 6e-72 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.002G052800.1.p |