PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G031000.1.p
Common NameSb02g002760, SORBIDRAFT_02g002760
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 414aa    MW: 44068.4 Da    PI: 6.1884
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G031000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH57.22.9e-18219265455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            hn+ ErrRRdriN+++  L+el+P++      K +Ka+iL +A+eY+ksLq
  Sobic.002G031000.1.p 219 VHNMSERRRRDRINEKMRALQELVPHC-----NKTDKASILDEAIEYLKSLQ 265
                           6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.15E-19209269No hitNo description
SuperFamilySSF474599.16E-22213281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.743215264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-22219274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-15219265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-18221270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MGVRPDGELV ELLWQDGAVV AHSQAQAHHH HHHHYRRPLV QVAAGNTGAS GVTGEQAPAL  60
PWLPCSGGAM GGDVYSQLWQ SIAQADGRVV GADAVAGAPR PPARSGNSGV GSSRTAGQEV  120
GSSFSGSNLV AAAMHLDDDI DDVGVAAALP VPLDDPATAT GAGAGASTSS GWNSNAPLHK  180
RSRDEFDEDA DLDTVDETPP SSRDRRPASN KRRTRAAEVH NMSERRRRDR INEKMRALQE  240
LVPHCNKTDK ASILDEAIEY LKSLQMQVQI MWMSTGMAPM MIPGAHQLMP PMTMGLNSAR  300
MPPPAVQFLS QMQRVPPHFM NNPLLNQMPQ MLPPPTNAPN VTDQAQSNRM ALPRNPFLHP  360
NDSDALTTPH QVPSLFGYGP QMVQVNEIQE LLTSTAAPAL GTDLPSSSDG TGA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1210227KRRTRAAEVHNMSERRRR
2223228ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G031000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021308074.10.0transcription factor PIF5
TrEMBLA0A1W0W2420.0A0A1W0W242_SORBI; Uncharacterized protein
STRINGSb02g002760.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31743482
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.15e-33phytochrome interacting factor 3-like 5