PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G030400.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family FAR1
Protein Properties Length: 712aa    MW: 81154.6 Da    PI: 5.7246
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G030400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR156.59.3e-1861143290
                  FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                           f ++YA+e GF++++++sk+   +++    t+ C+++gk++ +++k     +++++t+t+C akl+ ++++++k+++t+l leHnH+l 
  Sobic.002G030400.1.p  61 FSQRYAQEKGFTITRRTSKTM--DEKLQYFTLACNRQGKAQCSRNK----LNQNPSTKTQCPAKLNFRLHDTDKFCLTSLILEHNHDLI 143
                           6689***********998887..88899*************99877....99***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.3E-1561144IPR004330FAR1 DNA binding domain
PfamPF105513.4E-26292385IPR018289MULE transposase domain
PROSITE profilePS509669.532577613IPR007527Zinc finger, SWIM-type
PfamPF044340.0011586609IPR007527Zinc finger, SWIM-type
SMARTSM005757.7E-5588615IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 712 aa     Download sequence    Send to blast
MAEIEPLQVV VYEGNADLQM SGGEDEFVAL PGNGSTDAAQ EGNADPVKGM IFDSEDDAIA  60
FSQRYAQEKG FTITRRTSKT MDEKLQYFTL ACNRQGKAQC SRNKLNQNPS TKTQCPAKLN  120
FRLHDTDKFC LTSLILEHNH DLIPSETGIN VCRNKIPGVR AKRRRQESSG RSEVCANNVQ  180
GGHYENPQFG ENECTDNSKE ETRLKLCANN AQGGGFENPQ LGENECTDNS KEETRLKFSA  240
EDTHVLYQYF FRMQSKNPNF FYAMDFDENS RLRNVFWADA RSRAAYESFS DVVKFDAAYL  300
TSKYEVPLAS FVGVNHHGEP ILLGCGLLSN QNTESFVWLF KSLLACMSYK PPKGLITDQC  360
DEVQDAVEQV FPQTYHSWCL LSVMKKLPEK LRGFSKLKDF RFIFSNVVYE SLTKCEFEKG  420
WLEMTSKFGL QGNYWLIQLC INWQKWAPAY IKDTFWAGMA VTKECESEYA LFDGYVSSGT  480
KINQFLEQYS KALRDMVEKE KNADFKSSHE VASCITHYDI EKQFQLVYTN KKFEEFQEQL  540
KGKIYCYPKL LKQEGTSYTF NVAQDVKIRE QQLTLDFSVW FNGDGCDVKC ACRHFEFQGI  600
LCCHIISVLT LMKVKEVPSK YVLQRWRKDL ERSYTSIACS YDENVSTPIA QRFDVLCKSF  660
YGVAEKAATS DALFESVMDG LAQLKVKVEA QHAIPNPQSG NASSERQDME I*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.59650.0pollen
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G030400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021310203.10.0protein FAR-RED IMPAIRED RESPONSE 1
TrEMBLA0A1B6Q8X10.0A0A1B6Q8X1_SORBI; Uncharacterized protein
STRINGSb02g002703.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.11e-108FAR1 family protein