PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G016300.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family G2-like
Protein Properties Length: 394aa    MW: 42290.7 Da    PI: 7.1706
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G016300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1001.6e-31269324156
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                           k r++W++eLH++Fv a++qLGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  Sobic.002G016300.1.p 269 KVRRCWSTELHRQFVAALNQLGGPQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 324
                           679***************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.276266326IPR017930Myb domain
SuperFamilySSF466893.58E-16267327IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-28267327IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-25269324IPR006447Myb domain, plants
PfamPF002491.1E-6271322IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MELTFHDLPP FPSAARALLP SGTQDTTVDR FIATMGLDVV EIGMGADLSL DLRHFATKAV  60
RQSKDDAPAP DMDACIRRLE EERGKIEMFK RELPLCARLL ADVIDVMKEE AGKKTTKRSD  120
RSLPAAEEDE DGAAGDKSKW MSTAQLWTGD SGREDAESEK QDKGRSLPEA KSRGGALLPF  180
KAAVGSGAPA FASLCLRTDD KAARVGMPDL SLLSPPATKS AAEESRRQVV GLAQAAARAA  240
AMAPAAPALG LQSQSQQQTA QQQQQQARKV RRCWSTELHR QFVAALNQLG GPQVATPKQI  300
RELMKVDGLT NDEVKSHLQK YRLHNRRAPG SGVVSQPIML VGGLWIPQEQ SSSQSGSPHG  360
PLHFSTASGI AVSSAATVSC EEEDGRSESY GWK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G016300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9605030.0EU960503.1 Zea mays clone 225486 myb-like DNA-binding domain, SHAQKYF class family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002459272.20.0transcription factor HHO2
TrEMBLC5X8090.0C5X809_SORBI; Uncharacterized protein
STRINGSb02g001600.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP181737107
Representative plantOGRP25631133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.11e-42G2-like family protein