PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G527500.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 324aa    MW: 34048.7 Da    PI: 8.6817
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G527500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.62.6e-14132183155
                           CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +r++h ++Er+RR+ +N+ ++ Lr+l+P++   + ++ + a+++  A++Y+k+L+
  Sobic.001G527500.1.p 132 QRMTHIAVERNRRRLMNDHLASLRSLIPSS---YIPRGDQATVVGGAIDYVKQLE 183
                           79****************************...9*******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.14E-15123191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.32E-12130183No hitNo description
Gene3DG3DSA:4.10.280.102.4E-14130186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.154131182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-11132183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-9137188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MMCLSCSPSG VGVATTVAVM EQWADKQQQA ASTSAAVAAA QMPFLALLQG AGVVMEAEEQ  60
QQHDGRKRQA FARAVSDLDL LESCVTQAAV APAAASAPVA SRTERRRKRP RPRARAAPPP  120
EKRRKPEEAE SQRMTHIAVE RNRRRLMNDH LASLRSLIPS SYIPRGDQAT VVGGAIDYVK  180
QLEQQLVALQ AAAAARRDGT GAGAAVATAA SDGVFVSPQY ASYSDSSRGG LGAGVDVEAT  240
AAVGGHVRVR VAGRRWPGRL VRAVAALEDL RLAVLHLAVT SVGHDAVVYC FNLKMEEGCE  300
VATADEVATV VHQIFAYAAG ACC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104114RRRKRPRPRAR
2106112RKRPRPR
3106124RKRPRPRARAAPPPEKRRK
4107111KRPRP
5132143RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G527500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU7286911e-178EU728691.1 Zea mays RFLP marker p-umc164 full length insert sequence of entire PstI fragment genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023157150.11e-143transcription factor bHLH57
TrEMBLA0A1Z5SBR80.0A0A1Z5SBR8_SORBI; Uncharacterized protein
STRINGSb01g049080.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79573344
Representative plantOGRP1417044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01460.16e-34bHLH family protein