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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sobic.001G519100.1.p |
| Common Name | Sb01g048420, SORBIDRAFT_01g048420 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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| Family |
G2-like |
| Protein Properties |
Length: 407aa MW: 43497.3 Da PI: 8.2996 |
| Description |
G2-like family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sobic.001G519100.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | G2-like | 100.9 | 8.1e-32 | 27 | 80 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
prlrWtp+LH++Fv+a+++LGG++kAtPk++l+lm+v gLt++hvkSHLQ+YR
Sobic.001G519100.1.p 27 PRLRWTPDLHHCFVHAIHKLGGQDKATPKRVLQLMGVGGLTISHVKSHLQMYRN 80
8****************************************************5 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 407 aa
Download sequence Send
to blast |
MTMVRTTTVV GRERSGGVRQ YNRSKVPRLR WTPDLHHCFV HAIHKLGGQD KATPKRVLQL 60
MGVGGLTISH VKSHLQMYRN MRNDLGMQGT MQVHRMQDQE HVYGGGMHME LCTNILVQQQ 120
PQQQCDHECD APCCICCHSP KPGKEATLFQ RQLKRAETRR EREEIDGSAS PKRVVLLRGG 180
PGPGICESDG SPCCALAAAG GYNYMRMMQA AMGVAAAAGA PPPPPPPRHA ETMVEPGGRG 240
PGIKQTQLQL ARPGADGDGG DEHAPPPPPP PSNSKQRFTF LGFVVAPGPP PPPPPPPPCC 300
SSRDRDHPFE MVGTALTHHR SSAEAARRLP RGLETPPSKA AVAQQVGDPC SSSAGSEEDD 360
DGCSLSLSLA LDTRSSRDGD EGGRLSPTAT ASSRSRISLD LSLSTL*
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 6j4r_A | 5e-18 | 28 | 82 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_B | 5e-18 | 28 | 82 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_C | 5e-18 | 28 | 82 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_D | 5e-18 | 28 | 82 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | BT068910 | 1e-126 | BT068910.1 Zea mays full-length cDNA clone ZM_BFc0191L18 mRNA, complete cds. |
