PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G518900.1.p
Common NameSb01g048400, SORBIDRAFT_01g048400
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 286aa    MW: 30094.2 Da    PI: 5.85
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G518900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.13.7e-09158200855
                           HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           + r+RR+ri ++ +eL +l+P a      Kl+ ae+Le+A +++k Lq
  Sobic.001G518900.1.p 158 AARQRRKRISEKTAELARLIPGA-----HKLNTAEMLEEAARHVKLLQ 200
                           569*******************9.....7****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.855150199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.26E-10151203No hitNo description
SuperFamilySSF474591.14E-10153207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-9156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-8158206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-6159200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MALSFHPTTA SLFGHHRLPA PNAAADMSFL QDDDDDVHSE VTDALLGFVY DPLDASNAAL  60
DDLLSLPPPS DATAAAFLAP RDGATGADQN SGKRQRIGGG NQQVPLMNDE YVLHLPLPPP  120
PVVPVLTTQV PEPLVFVRGA DSNKNAGGGA CQSVQKSAAR QRRKRISEKT AELARLIPGA  180
HKLNTAEMLE EAARHVKLLQ AQVGVLALMR AAGSSEEEKM PSAMAQERMH ALLACGGVQE  240
LLTAEGKCLV PTSLVDAVAK DADVKANPVV RRDLGRFVAS LQAGQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.57200.0pollen
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G518900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1846766e-35KF184676.1 Saccharum hybrid cultivar R570 clone BAC 250M20 complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465928.10.0uncharacterized protein LOC8061437
TrEMBLA0A1Z5SC320.0A0A1Z5SC32_SORBI; Uncharacterized protein
STRINGSb01g048400.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62013051
Representative plantOGRP59691219
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.12e-19bHLH family protein