PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.001G517800.1.p

Common Name

Sb01g048290, SORBIDRAFT_01g048290

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

Nin-like

Protein Properties

Length: 906aa MW: 100630 Da PI: 5.725

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.001G517800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.7	2.4e-28	599	649	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sle+l+k+F++++k+AAk+Lgvc+T+LKriCRq+GI+RWP+Rkik++ Sobic.001G517800.1.p 599 EKTVSLEELRKHFAGSLKEAAKNLGVCPTTLKRICRQHGINRWPSRKIKKV 649 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.938	588	669	IPR003035	RWP-RK domain
Pfam	PF02042	4.3E-26	601	649	IPR003035	RWP-RK domain
Gene3D	G3DSA:3.10.20.240	6.5E-25	817	902	No hit	No description
SuperFamily	SSF54277	1.82E-22	818	901	No hit	No description
PROSITE profile	PS51745	21.781	820	903	IPR000270	PB1 domain
SMART	SM00666	5.1E-24	820	903	IPR000270	PB1 domain
Pfam	PF00564	4.5E-16	821	902	IPR000270	PB1 domain
CDD	cd06407	7.48E-40	821	901	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 906 aa Download sequence Send to blast
MEKAPQTDDD GLLACGVMEM DDIAVGDLDL MEELFMAAPG FDFSDFSQPG PGGASPGSCF 60 SPLFDICSTT TTATPPPAPE PAGDDDQAAA APPPRRGWVF QPRHEVEATV KERLRRALER 120 IASLSQTQPG ELLAQVWVPT VIGDRQVLTT CGQPFWLDRR NERLANYRTV SMKYQFSADE 180 TARADLGMPG RVFVGRVPEW TPDVRYFSTE EYPRVRHAQY FDIRGSVALP IFEPRSRACL 240 GVVELVMTTE KVNYNAEIQN ICSALKEVDL RSSDVSSDPR AKVTDTSYRA TIPEIVDVLR 300 TVCETHKLPL AQTWIPCICQ AKRGSRHTDE KLKYCVSTVD EACYVRDLNV KGFHEACSEH 360 HLFRGEGVVG RAFGTNEPCF SEDITTSSKV QYPLSHHAKL FSLRAAVAIR LRSITTGSLD 420 YVLEFFLPVD CIEIEQQRAM LNSLSITIQQ TCYTLRVVSL KELVDEGSIE TSALTPPEYA 480 KTMHENLDEV CSGIDAPART ASLETSEEVS SWIASLVCAQ NKGVKEMDGD LPFGFSKQED 540 EGFSVTAGWH TTPVIGPEGS IFSGIKQHED YKVKEVTCLR DPSSSKLGKT VEKRRTKMEK 600 TVSLEELRKH FAGSLKEAAK NLGVCPTTLK RICRQHGINR WPSRKIKKVG HSLKKLQMVI 660 DSVHGNEGTV QLSSLYENFT KTTWSERELQ GDASYPLSEE KGLLEPSVPD QHCEGRFTSH 720 TSGSNSLSPS CSQSSNSSHG CSSGSKSQQH GSASQLAVKK EVFMEENQSS TLLKAASHAE 780 LQMCPEERPV TLPRSHSQML LSEQKPVENM TGMQMSKPDS LKIKAMYGEE RCIFRLQPSW 840 GFEKLKEEIL KRFGVAQEMH VDLKYLDDES EWVLLTCDAD LLECIDVYKS SNTQTVRISV 900 HSNGQ*

Sequence ? help Back to Top

Protein Sequence Length: 906 aa Download sequence Send to blast

MEKAPQTDDD GLLACGVMEM DDIAVGDLDL MEELFMAAPG FDFSDFSQPG PGGASPGSCF  60
SPLFDICSTT TTATPPPAPE PAGDDDQAAA APPPRRGWVF QPRHEVEATV KERLRRALER  120
IASLSQTQPG ELLAQVWVPT VIGDRQVLTT CGQPFWLDRR NERLANYRTV SMKYQFSADE  180
TARADLGMPG RVFVGRVPEW TPDVRYFSTE EYPRVRHAQY FDIRGSVALP IFEPRSRACL  240
GVVELVMTTE KVNYNAEIQN ICSALKEVDL RSSDVSSDPR AKVTDTSYRA TIPEIVDVLR  300
TVCETHKLPL AQTWIPCICQ AKRGSRHTDE KLKYCVSTVD EACYVRDLNV KGFHEACSEH  360
HLFRGEGVVG RAFGTNEPCF SEDITTSSKV QYPLSHHAKL FSLRAAVAIR LRSITTGSLD  420
YVLEFFLPVD CIEIEQQRAM LNSLSITIQQ TCYTLRVVSL KELVDEGSIE TSALTPPEYA  480
KTMHENLDEV CSGIDAPART ASLETSEEVS SWIASLVCAQ NKGVKEMDGD LPFGFSKQED  540
EGFSVTAGWH TTPVIGPEGS IFSGIKQHED YKVKEVTCLR DPSSSKLGKT VEKRRTKMEK  600
TVSLEELRKH FAGSLKEAAK NLGVCPTTLK RICRQHGINR WPSRKIKKVG HSLKKLQMVI  660
DSVHGNEGTV QLSSLYENFT KTTWSERELQ GDASYPLSEE KGLLEPSVPD QHCEGRFTSH  720
TSGSNSLSPS CSQSSNSSHG CSSGSKSQQH GSASQLAVKK EVFMEENQSS TLLKAASHAE  780
LQMCPEERPV TLPRSHSQML LSEQKPVENM TGMQMSKPDS LKIKAMYGEE RCIFRLQPSW  840
GFEKLKEEIL KRFGVAQEMH VDLKYLDDES EWVLLTCDAD LLECIDVYKS SNTQTVRISV  900
HSNGQ*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sbi.4803	0.0	embryo\| leaf\| ovary

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.001G517800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002465923.1	0.0	protein NLP1
Refseq	XP_021317584.1	0.0	protein NLP1
Swissprot	Q10S83	0.0	NLP1_ORYSJ; Protein NLP1
TrEMBL	C5WZW2	0.0	C5WZW2_SORBI; Uncharacterized protein
STRING	Sb01g048290.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11025	32	41
Representative plant	OGRP299	16	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17150.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Sobic.001G517800.1.p
Entrez Gene	8085681

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]