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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.001G513700.1.p | ||||||||
Common Name | Sb01g047940, SORBIDRAFT_01g047940 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bHLH | ||||||||
Protein Properties | Length: 374aa MW: 39897.9 Da PI: 4.8244 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.9 | 6.4e-12 | 205 | 247 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L Sobic.001G513700.1.p 205 MAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYVKEL 247 79*********************66......****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.351 | 198 | 247 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.46E-16 | 202 | 268 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-12 | 204 | 253 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.9E-15 | 205 | 262 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.41E-5 | 205 | 252 | No hit | No description |
Pfam | PF00010 | 1.8E-9 | 205 | 247 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MELDEEAFLD ELMSLRREAA ASSAPWQQAD PCSAYPGAGG GGGGMMMSDL LFYGGTTEGA 60 AADATSMDLS PFHQEPLQAP MPPAAARTPL PPPHPHEEFN FDCLSEVCNP YRSGGGGVAV 120 PGAEAVAVPG HKQALAALHD AMVEEETSGD LDLQGQQHYG GGGSPTFVFG GGARGESSEM 180 PIVRGVGGPH HHRSKLHGAP SKNLMAERRR RKRLNDRLSM LRSIVPKISK MDRTSILGDT 240 IDYVKELTER IKVLEEEIGA SPEDLDLLNT LKDSSSCSNE MMVRNSTKFD VEKRGNGSTR 300 IEICCPTNPG VLLSTVSALE VLGLEIEQCV VSCFSDFAMQ ASCSQEDGKR QVLSTDEIKQ 360 ALFRSAGYGG RCL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 206 | 213 | ERRRRKRL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.001G513700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU964715 | 0.0 | EU964715.1 Zea mays clone 281052 DNA binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002465906.1 | 0.0 | transcription factor bHLH61 | ||||
TrEMBL | C5WZ04 | 0.0 | C5WZ04_SORBI; Uncharacterized protein | ||||
STRING | Sb01g047940.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1302 | 37 | 99 | Representative plant | OGRP2636 | 11 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.1 | 8e-67 | beta HLH protein 93 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.001G513700.1.p |
Entrez Gene | 8057408 |