PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G496200.1.p
Common NameSb01g046350, SORBIDRAFT_01g046350
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family HSF
Protein Properties Length: 392aa    MW: 43775.1 Da    PI: 4.8696
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G496200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind104.96.7e-33471382102
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Fl+k+++++ d++++e+isw + gnsfvv+d++ fa  +Lp++Fkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F +g+
  Sobic.001G496200.1.p  47 FLTKTFDLVADPATDEVISWGRAGNSFVVWDPHVFAAVLLPRFFKHNNFSSFVRQLNTYGFRKIDPDR---------WEFANEGFLRGQ 126
                           9****************************************************************999.........************ PP

                           XXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkks 102
                           ++ll+ ikr++ 
  Sobic.001G496200.1.p 127 RHLLRLIKRRRP 138
                           *********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.5E-3743136IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.94E-3543136IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-5943136IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.1E-3047136IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.8E-194770IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.8E-198597IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434086110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.8E-1998110IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MDRMLPGTVT VKEEWPPEEE EEEEVVVEDV DAPRPMEGLH EVGPPPFLTK TFDLVADPAT  60
DEVISWGRAG NSFVVWDPHV FAAVLLPRFF KHNNFSSFVR QLNTYGFRKI DPDRWEFANE  120
GFLRGQRHLL RLIKRRRPAP PPPYLQASQS QSQGSCLEVG QFGGLDGEMD RLRRDKSILL  180
AEVVKLRQEQ QSTRAGMRAM EERLQHAEHK QVQMMGFLAR AMQSPDFFQQ LAQQQDRRRE  240
LEGALMLSAA ASRKRRRPIG TAPALLDGGV QEEEEEEQAA DDDPTATQAL FAELDERGTT  300
SELENLALNI QGLGSSKRRQ GGGGARSQQR AAAVGGGETA ELTDDFWEEL LNEGMRGGAA  360
AELLPPERRR PGWYVDALAQ KLSSMSNTTA K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A9e-26451368110Heat shock factor protein 1
5hdn_A9e-26451368110Heat shock factor protein 1
5hdn_B9e-26451368110Heat shock factor protein 1
5hdn_C9e-26451368110Heat shock factor protein 1
5hdn_D9e-26451368110Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130135RLIKRR
2236256RRRELEGALMLSAAASRKRRR
3252256RKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G496200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0556310.0BT055631.1 Zea mays full-length cDNA clone ZM_BFc0084J01 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002468465.10.0heat stress transcription factor A-2d
SwissprotQ8H7Y61e-163HFA2D_ORYSJ; Heat stress transcription factor A-2d
TrEMBLC5WWX90.0C5WWX9_SORBI; Uncharacterized protein
STRINGSb01g046350.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.12e-99heat shock transcription factor A6B