PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.001G489900.1.p

Common Name

Dof23, Sb01g045840, SORBIDRAFT_01g045840

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

Dof

Protein Properties

Length: 425aa MW: 45170.8 Da PI: 8.4221

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.001G489900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.4	8.6e-40	94	154	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GGa+rnvPvG+grrk+k++s Sobic.001G489900.1.p 94 PDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKSKSAS 154 7899*****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-27	90	143	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.7E-32	96	152	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.929	98	152	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	100	136	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence Send to blast
MGEGRAGDGL IKLFGKTIPV PETPAAGDAA KDIQQSGSSG TTDLKGQENT LQDSTGSPPQ 60 QEVADTEDSS AAKNSSADKQ QGEAANQKEK LKKPDKILPC PRCNSMDTKF CYYNNYNINQ 120 PRHFCKNCQR YWTAGGAMRN VPVGAGRRKS KSASAASHFL QRVRAALPMD PLCTAAKTNG 180 TVLSFGSDMS SLDLTEQMKH LKEKLIPIAG IKNGDERSVG SCTEGPAKAE DSNQKENVTA 240 EKSAKLVQHP CMNGVAMWPF SCAPPPACYT PGSIAIPFYP APAAYWGCMV PGAWNAPWPP 300 QSPSETGSTL STASPASTKS NCFTPGKRPR DCNEEGDTKG NGKVWVPKTI RIDDVDEVAR 360 SSILSLIGIN GDKAGKDGKG CKLARVFEQK EEARTATHSV INGLPFLQGN PAALSRSLTF 420 QEGS*

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence Send to blast

MGEGRAGDGL IKLFGKTIPV PETPAAGDAA KDIQQSGSSG TTDLKGQENT LQDSTGSPPQ  60
QEVADTEDSS AAKNSSADKQ QGEAANQKEK LKKPDKILPC PRCNSMDTKF CYYNNYNINQ  120
PRHFCKNCQR YWTAGGAMRN VPVGAGRRKS KSASAASHFL QRVRAALPMD PLCTAAKTNG  180
TVLSFGSDMS SLDLTEQMKH LKEKLIPIAG IKNGDERSVG SCTEGPAKAE DSNQKENVTA  240
EKSAKLVQHP CMNGVAMWPF SCAPPPACYT PGSIAIPFYP APAAYWGCMV PGAWNAPWPP  300
QSPSETGSTL STASPASTKS NCFTPGKRPR DCNEEGDTKG NGKVWVPKTI RIDDVDEVAR  360
SSILSLIGIN GDKAGKDGKG CKLARVFEQK EEARTATHSV INGLPFLQGN PAALSRSLTF  420
QEGS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sbi.667	0.0	leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.001G489900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC169375	0.0	AC169375.4 Sorghum bicolor clone SB_BBc0020O07, complete sequence.
GenBank	HQ540086	0.0	HQ540086.1 Sorghum bicolor clone SbDof23 Dof-type zinc finger protein gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002468428.1	0.0	cyclic dof factor 1 isoform X1
TrEMBL	C5WWR6	0.0	C5WWR6_SORBI; Dof-type zinc finger protein
STRING	Sb01g045840.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2099	37	93
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-50	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	Sobic.001G489900.1.p
Entrez Gene	8082122

Publications ? help Back to Top
Kushwaha H,Gupta S,Singh VK,Rastogi S,Yadav D Genome wide identification of Dof transcription factor gene family in sorghum and its comparative phylogenetic analysis with rice and Arabidopsis. Mol. Biol. Rep., 2011. 38(8): p. 5037-53 [PMID:21161392] Kushwaha H, et al. Cloning, in silico characterization and prediction of three dimensional structure of SbDof1, SbDof19, SbDof23 and SbDof24 proteins from Sorghum [Sorghum bicolor (L.) Moench]. Mol. Biotechnol., 2013. 54(1): p. 1-12 [PMID:22476870]