PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G488400.1.p
Common NameSb01g045690, SORBIDRAFT_01g045690
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 87aa    MW: 9690.97 Da    PI: 9.3331
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G488400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.6e-0812531454
                          HHHHHHHHHHHCTSCCC....TTS-STCHHHHHHHHHHHHHH CS
                   HLH 14 driNsafeeLrellPkas.kapskKlsKaeiLekAveYIksL 54
                          d+iN+ +++L+ llP++s + ++ + s +  L++++ YIksL
  Sobic.001G488400.1.p 12 DEINELISKLQALLPESSrRRNASRSSASKLLKETCAYIKSL 53
                          68**************6647777889***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.832153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-91268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-81272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-61253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MSSGRRGRIS DDEINELISK LQALLPESSR RRNASRSSAS KLLKETCAYI KSLHREVDDL  60
SERLSGLMST MDNDSPQAEI IRSLLR*
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}.
UniProtAtypical and probable non DNA-binding bHLH transcription that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G488400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0639071e-122BT063907.2 Zea mays full-length cDNA clone ZM_BFc0119B05 mRNA, complete cds.
GenBankEU9645851e-122EU964585.1 Zea mays clone 280170 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001149761.19e-54uncharacterized protein LOC100283388
RefseqXP_002468422.19e-54transcription factor ILI3
RefseqXP_008677317.19e-54DNA binding protein isoform X1
RefseqXP_021318617.19e-54transcription factor ILI3
SwissprotA2XD151e-34ILI3_ORYSI; Transcription factor ILI3
SwissprotQ10R471e-34ILI3_ORYSJ; Transcription factor ILI3
TrEMBLA0A317Y6E12e-52A0A317Y6E1_MAIZE; Transcription factor ILI3
TrEMBLB6THX02e-52B6THX0_MAIZE; BHLH transcription factor
TrEMBLC5WVX82e-52C5WVX8_SORBI; Uncharacterized protein
STRINGSb01g045690.13e-53(Sorghum bicolor)
STRINGGRMZM2G159456_P013e-53(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92838145
Representative plantOGRP1953822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.12e-24bHLH family protein