PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G482200.4.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family FAR1
Protein Properties Length: 688aa    MW: 77981.8 Da    PI: 8.0781
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G482200.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA31.23.1e-101241235
                  GATA 12 WRrgpdgnktLCnaCGlyyrkkgl 35
                          +Rrgp+g +tLCnaCG+ ++k ++
  Sobic.001G482200.4.p  1 MRRGPEGRRTLCNACGIAWAKGKM 24
                          5*******************9875 PP
2FAR186.15.2e-2758143188
                  FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                           +fYn+YA +vGFsvrks+s ks +n  + +rt vCs+eg+r+++k + ++ +r+r+etr+gC a++++k ++dgk+++++++ +HnHe
  Sobic.001G482200.4.p  58 EFYNRYAGHVGFSVRKSSSDKSAENI-TRSRTCVCSREGFRKDKKGA-KEVKRPRPETRIGCPARMTIKITSDGKYRIAEFVADHNHE 143
                           6*********************6665.999*************9999.999************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF003201.0E-7122IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.107.6E-7125IPR013088Zinc finger, NHR/GATA-type
PfamPF031016.9E-2458143IPR004330FAR1 DNA binding domain
PfamPF105511.3E-25267361IPR018289MULE transposase domain
PfamPF044341.7E-5535579IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.94535582IPR007527Zinc finger, SWIM-type
SMARTSM005756.2E-4557584IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MRRGPEGRRT LCNACGIAWA KGKMRKVIDS DTHIDDATVA KMVPEVGMEF DNEDKAYEFY  60
NRYAGHVGFS VRKSSSDKSA ENITRSRTCV CSREGFRKDK KGAKEVKRPR PETRIGCPAR  120
MTIKITSDGK YRIAEFVADH NHEPAPPSTM HMLRSQRVLT DLQTTEADSS EDSTTPSRIS  180
SGCLVRQAGE TTNLNFLPAD YRTSLPSKRM KNMQPGDAGA AVKYFQSMQM SSPSFFHAFQ  240
LDEDDKLTNI FWADSKSRTD FSYFGDVVCL DTTYKVNSHG RPLMLFLGVN HHKQISIFGA  300
ALLYDESMES FKWLFDTFKV ATGGKQPKTI LTDQSMTATA AITAAWPGTI HRHCPWQVYQ  360
NAVKHLNHIF QGSKTFAKDL SKCVYEYEEE EDFLLGWSTM LEKYDLRNNE WLRKLFQDRD  420
KWAPVYNRHV FTADIKNSLQ SESISSVLKK YLSPQFNLCS FFKHFEKVLD EHRYSELQAD  480
FHASQSFPRI PPSKMLRQAA SMYTPVVFEI FRREFEMSVD SVIYSCGEAG TASDYRVAVT  540
DKPGEHYVKF ESSDFSAVCS CKKFESMGIQ CCHVLKVLDF RNIKELPQKY FMGRWKKDAK  600
SANTGNQEFL NDGASQTPSS SLNGPGPFIH HQHMETNNQT NHDSSVSNLD QQGLHGDAQR  660
NQGYTPVAGV QQLEFVGNFH LNNGAGF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106110KRPRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G482200.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021301566.10.0protein FAR1-RELATED SEQUENCE 5 isoform X2
TrEMBLA0A1B6QQ460.0A0A1B6QQ46_SORBI; Uncharacterized protein
STRINGSb01g045140.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-118FAR1-related sequence 5