PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G443000.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 460aa    MW: 47915.9 Da    PI: 9.4989
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G443000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.27.8e-0784106123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           y+C++Cg+ F r  nL+ H r+H
  Sobic.001G443000.1.p  84 YVCEICGQGFQREQNLQMHRRRH 106
                           9*********************9 PP
2zf-C2H210.70.0017188210123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C  C k +  +s++k H++t+
  Sobic.001G443000.1.p 188 WVCARCAKGYAVQSDYKAHLKTC 210
                           58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.38E-783106No hitNo description
Gene3DG3DSA:3.30.160.601.5E-583106IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003556.5E-484106IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.75984106IPR007087Zinc finger, C2H2
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
SMARTSM00355110152182IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.38E-7183208No hitNo description
SMARTSM00355270188215IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MALLVKSHHQ MLVSSSTSSS SPSASQQQRQ PPPAHPPPPP PSSSCLTDQQ PSPAKRKRRP  60
PGTPDPDAEV VALSPRTLLE SDRYVCEICG QGFQREQNLQ MHRRRHKVPW RLVKRAPPPA  120
AAGGEDGAAG GGGGANSSST AGGGGAPRKR VFVCPEPSCL HHDPAHALGD LVGIKKHFRR  180
KHGGRRQWVC ARCAKGYAVQ SDYKAHLKTC GTRGHSCDCG RVFSRVESFI EHQDACNSSR  240
MRGEAAAVVA VPPSALPVIR PAVPRHPATV APPPPELQLL PASSAAASSS APPLTSTSLS  300
TTTTASQKQE ERPHAAATTT KLQLSIGPIV TATGADAAAV VGEDEEDSEA EELRRAMEEK  360
AAADAARERA RGEAAAAERA LDEARRARQR ARADLEKAFA LRDHAALLLA QVTCHACRQR  420
SLAVAAVVRG GGGGGEGHAG PAMACDSIRG GGGFGAAGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-17184238357Zinc finger protein JACKDAW
5b3h_F7e-17184238357Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G443000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0871650.0BT087165.2 Zea mays full-length cDNA clone ZM_BFb0183A11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021312760.10.0protein indeterminate-domain 16
TrEMBLA0A1B6QPH60.0A0A1B6QPH6_SORBI; Uncharacterized protein
STRINGGRMZM2G074032_P011e-172(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105138124
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.13e-86C2H2-like zinc finger protein