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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Sobic.001G435500.2.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
| Family |
NF-YC |
| Protein Properties |
Length: 248aa MW: 26178.4 Da PI: 5.2637 |
| Description |
NF-YC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sobic.001G435500.2.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NF-YC | 169.6 | 3.8e-53 | 46 | 151 | 1 | 101 |
NF-YC 1 qlksfwekq.....iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavt 84
ql++fw++q + +a+dfknh+lPlarikki+kadedv+misaeaPvl++kacelfilelt+rswlhaeenkrrtl+++d+aaa++
Sobic.001G435500.2.p 46 QLQAFWAYQrqeaeRASASDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQRNDVAAAIA 134
89*****997665555689********************************************************************** PP
NF-YC 85 rtdifdflvdivprdel 101
rtd+fdflvdivpr+e
Sobic.001G435500.2.p 135 RTDVFDFLVDIVPREEA 151
**************986 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009738 | Biological Process | abscisic acid-activated signaling pathway |
| GO:0010468 | Biological Process | regulation of gene expression |
| GO:0048586 | Biological Process | regulation of long-day photoperiodism, flowering |
| GO:0051247 | Biological Process | positive regulation of protein metabolic process |
| GO:2000905 | Biological Process | negative regulation of starch metabolic process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0005829 | Cellular Component | cytosol |
| GO:0046982 | Molecular Function | protein heterodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 248 aa
Download sequence Send
to blast |
MDNQPLPYST GQPPAPGGTP VVPGVPGAAG PPPVPHHHLL QQQQAQLQAF WAYQRQEAER 60
ASASDFKNHQ LPLARIKKIM KADEDVRMIS AEAPVLFAKA CELFILELTI RSWLHAEENK 120
RRTLQRNDVA AAIARTDVFD FLVDIVPREE AKEEPGSALG FAASGTGVVG GGAPGGAPAA 180
GMPYYYPPMG QPAPMMPAWH VPAWDPAWQQ GAADVDHSGS FSEEGQAGFA AGHGGPASFP 240
PAPPSSE*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases at the end of the dark period, peaks in the beginning of the light period and gradually decreases during daytime. {ECO:0000269|PubMed:26542958}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT085720 | 0.0 | BT085720.2 Zea mays full-length cDNA clone ZM_BFc0051B15 mRNA, complete cds. |
| GenBank | EU957220 | 0.0 | EU957220.1 Zea mays clone 1585988 nuclear transcription factor Y subunit C-1 mRNA, complete cds. |
