PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.001G430000.1.p

Common Name

Sb01g040450, SORBIDRAFT_01g040450

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

bHLH

Protein Properties

Length: 446aa MW: 47150.5 Da PI: 6.2443

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.001G430000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42	1.7e-13	213	259	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN +++Lr+llP+ +K +Ka+ L ++++++k+L Sobic.001G430000.1.p 213 KSHSEAERRRRERINAHLARLRSLLPNT-----TKTDKASLLAEVIQHVKEL 259 79***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	17.022	210	259	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.4E-11	213	259	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.2E-14	214	268	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.16E-14	214	269	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-13	216	265	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.73E-5	223	262	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence Send to blast
MGGHGDHHSH HHHQEVGVLV DDDEEELIEH HARAACGGAT SGVVEQGVGD GGGGQDAAGM 60 VFEASSSVGS VSAATMAPPQ ILCWPPPQSA PPQQQQQQLH QDHHHHHHSV GQQSPFFPLL 120 PPLPPQPAPP PPFFADFYAR RALQFAYDHH HHSGGGPSTS SDPLGLGGLY MGMGHHGGSG 180 MMMPPPFASS PFGDFGRMTA QDIMDAKALA ASKSHSEAER RRRERINAHL ARLRSLLPNT 240 TKTDKASLLA EVIQHVKELK RQTSEIVTEE ACPLPTESDE LTVDASSDED GRLVVRASLC 300 CDDRADLLPD LIRALKALRL RALKAEITTL GGRVKNVLVI TADDSAGGGC EGAGTADDDQ 360 QEEAAAPMSP QHTVASIQEA LRAVMERTAS SSAAAEESGA AASSGGAAGL KRQRTTSLSA 420 ILENSKINRQ SFGAEVCRPR YKLSL*

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence Send to blast

MGGHGDHHSH HHHQEVGVLV DDDEEELIEH HARAACGGAT SGVVEQGVGD GGGGQDAAGM  60
VFEASSSVGS VSAATMAPPQ ILCWPPPQSA PPQQQQQQLH QDHHHHHHSV GQQSPFFPLL  120
PPLPPQPAPP PPFFADFYAR RALQFAYDHH HHSGGGPSTS SDPLGLGGLY MGMGHHGGSG  180
MMMPPPFASS PFGDFGRMTA QDIMDAKALA ASKSHSEAER RRRERINAHL ARLRSLLPNT  240
TKTDKASLLA EVIQHVKELK RQTSEIVTEE ACPLPTESDE LTVDASSDED GRLVVRASLC  300
CDDRADLLPD LIRALKALRL RALKAEITTL GGRVKNVLVI TADDSAGGGC EGAGTADDDQ  360
QEEAAAPMSP QHTVASIQEA LRAVMERTAS SSAAAEESGA AASSGGAAGL KRQRTTSLSA  420
ILENSKINRQ SFGAEVCRPR YKLSL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	218	223	ERRRRE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.001G430000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK106649	0.0	AK106649.1 Oryza sativa Japonica Group cDNA clone:002-113-F07, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002468148.1	0.0	transcription factor bHLH30
Swissprot	Q9S7Y1	8e-72	BH030_ARATH; Transcription factor bHLH30
TrEMBL	A0A1Z5SAC2	0.0	A0A1Z5SAC2_SORBI; Uncharacterized protein
STRING	Sb01g040450.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1918	38	98
Representative plant	OGRP377	15	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	9e-52	bHLH family protein

Link Out ? help Back to Top
Phytozome	Sobic.001G430000.1.p
Entrez Gene	8078820

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]