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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Sobic.001G405200.1.p |
Common Name | Sb01g038330, SORBIDRAFT_01g038330 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
Trihelix |
Protein Properties |
Length: 206aa MW: 22681.9 Da PI: 10.7079 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.001G405200.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 26.7 | 1.5e-08 | 19 | 87 | 2 | 64 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykki 64
W++ e+ Li+a ++ r r + l+ W++ ++++ + r f+r+ +qC+ + + l++ryk++
Sobic.001G405200.1.p 19 WSDGETARLIDAWGPVHLRRRPRGLRLEEWRAAARAVnahraaAGRRFNRTRVQCQTRVRTLKQRYKEE 87
****************************************9999999********************85 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 206 aa
Download sequence Send
to blast |
MNVCARSFPP PPESASGNWS DGETARLIDA WGPVHLRRRP RGLRLEEWRA AARAVNAHRA 60 AAGRRFNRTR VQCQTRVRTL KQRYKEELLK QPPSGWRHLP RLHAFLASPD DDSPPGIPAG 120 EPAVDAKQEV AEEAAGGGIG LADRWSVPRR PRNAAAGTGF CPGAVVVKLV EVYERVELAR 180 IAAEKVKMEM QQAQKAMIDA VKMEQ*
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