 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sobic.001G399600.1.p |
| Common Name | Sb01g037830, SORBIDRAFT_01g037830 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
| Family |
C3H |
| Protein Properties |
Length: 443aa MW: 47009.3 Da PI: 8.1649 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sobic.001G399600.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 32 | 2.1e-10 | 373 | 397 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
ktelC+ + r G C+y +rC+FaHg+
Sobic.001G399600.1.p 373 KTELCNKWER-GACPYDGRCRFAHGM 397
9*********.*************95 PP
|
| 2 | zf-CCCH | 21 | 6.1e-07 | 409 | 434 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
ykt +C+ fa++ C+yG rC+F H+
Sobic.001G399600.1.p 409 YKTLPCQLFAAGSGCPYGHRCHFRHS 434
9**********99**********998 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| Gene3D | G3DSA:4.10.1000.10 | 1.1E-14 | 368 | 403 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.446 | 371 | 398 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.14E-8 | 371 | 402 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 5.4E-6 | 371 | 397 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 6.8E-8 | 373 | 397 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 4.3E-10 | 404 | 434 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.79E-7 | 405 | 435 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.375 | 408 | 436 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.0019 | 408 | 435 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.9E-4 | 409 | 434 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 443 aa
Download sequence Send
to blast |
MEGDLAFFSP LRPSRLSFEG RDGRGFGSPT WASQLGTLRD SSPSSCVSDG RGGGNGRSGF 60
SSPTWGSPLE TLFNAPSSCV SDRHVGGNGS GFSSPTWGST LETLFNSPSS RVSDSPGAGN 120
GSMFSTPKQA SPLETLLNSP SSSSCVTDSR GSVTGSVSGT AKMALPLETL LNSPSSSISD 180
SRGGGSGSGF STTKKASPLE PLLNSPSSSV SDSRVCGNRS SPGISKERDS EQVKKAESLL 240
RAITERYENC FFRLRDTTAE LADLRLERVR LGAENLHLSL LLEELDAAEQ SKQASAVVLT 300
PPPKPAQAEA ASTPKSISIR SKGFLSKNQP QGVATPQRLR VRASQAMEDA GEKEKEKDDG 360
EVEVDAFRQG AMKTELCNKW ERGACPYDGR CRFAHGMEEL RPVIRHPRYK TLPCQLFAAG 420
SGCPYGHRCH FRHSMAPTAE SC*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC118668 | 4e-77 | AC118668.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0036G02, from chromosome 3, complete sequence. |
| GenBank | AC137267 | 4e-77 | AC137267.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G21, from chromosome 3, complete sequence. |
| GenBank | AP014959 | 4e-77 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012611 | 4e-77 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
