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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.001G388300.2.p | ||||||||
Common Name | Sb01g036810, SORBIDRAFT_01g036810 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bZIP | ||||||||
Protein Properties | Length: 245aa MW: 26010 Da PI: 10.0034 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 43.8 | 5.5e-14 | 174 | 216 | 5 | 47 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 +r +r++kNRe+A rsR+RK+a++ eLe+k+ +Le+eN++L+ Sobic.001G388300.2.p 174 RRKKRMIKNRESAARSRARKQAYTNELENKISQLEEENERLRR 216 799**************************************94 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.2E-8 | 170 | 242 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.725 | 172 | 216 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.8E-11 | 174 | 216 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 1.89E-21 | 174 | 216 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 5.6E-15 | 174 | 217 | No hit | No description |
SuperFamily | SSF57959 | 1.44E-10 | 174 | 216 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 177 | 192 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MGAEAMSSHG SRVGGGGGAL SRQGSVCSLT FSEVEGQLHG VNLDDLLRSG RKTADEVWRD 60 IQGAAAAAAA CPRAQMTLED FLSRGGGPPA DAAADTDTGS GARGWAQQLY QPAPAPAPLE 120 LGRHHPAVGR PVPRPLGAGA GPVLDALYHD GQDAVAGAKR VAGEGGVAER SNERRKKRMI 180 KNRESAARSR ARKQAYTNEL ENKISQLEEE NERLRRHKAP EPVVQYVPQQ ELKNRLRRAN 240 SANF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.001G388300.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002465343.2 | 1e-177 | ABSCISIC ACID-INSENSITIVE 5-like protein 2 | ||||
TrEMBL | A0A1B6QNJ1 | 1e-175 | A0A1B6QNJ1_SORBI; Uncharacterized protein | ||||
STRING | Sb01g036810.1 | 1e-173 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56850.1 | 3e-27 | ABA-responsive element binding protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.001G388300.2.p |
Entrez Gene | 8083695 |