PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G388300.1.p
Common NameSb01g036810, SORBIDRAFT_01g036810
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 245aa    MW: 26010 Da    PI: 10.0034
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G388300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_143.85.5e-14174216547
                           CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 
                           +r +r++kNRe+A rsR+RK+a++ eLe+k+ +Le+eN++L+ 
  Sobic.001G388300.1.p 174 RRKKRMIKNRESAARSRARKQAYTNELENKISQLEEENERLRR 216
                           799**************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.2E-8170242IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.725172216IPR004827Basic-leucine zipper domain
PfamPF001701.8E-11174216IPR004827Basic-leucine zipper domain
CDDcd147071.89E-21174216No hitNo description
Gene3DG3DSA:1.20.5.1705.6E-15174217No hitNo description
SuperFamilySSF579591.44E-10174216No hitNo description
PROSITE patternPS000360177192IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MGAEAMSSHG SRVGGGGGAL SRQGSVCSLT FSEVEGQLHG VNLDDLLRSG RKTADEVWRD  60
IQGAAAAAAA CPRAQMTLED FLSRGGGPPA DAAADTDTGS GARGWAQQLY QPAPAPAPLE  120
LGRHHPAVGR PVPRPLGAGA GPVLDALYHD GQDAVAGAKR VAGEGGVAER SNERRKKRMI  180
KNRESAARSR ARKQAYTNEL ENKISQLEEE NERLRRHKAP EPVVQYVPQQ ELKNRLRRAN  240
SANF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G388300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465343.21e-177ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBLA0A1B6QNJ11e-175A0A1B6QNJ1_SORBI; Uncharacterized protein
STRINGSb01g036810.11e-173(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44413367
Representative plantOGRP1592233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56850.13e-27ABA-responsive element binding protein 3