PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.001G380700.2.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

bZIP

Protein Properties

Length: 350aa MW: 37702.9 Da PI: 6.596

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.001G380700.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.6	7.5e-10	154	201	5	52
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l Sobic.001G380700.2.p 154 KRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTLF 201 9****************************************9888765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.5E-14	150	214	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.599	152	215	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.0E-10	154	208	No hit	No description
SuperFamily	SSF57959	9.14E-11	154	205	No hit	No description
Pfam	PF00170	1.3E-8	154	200	IPR004827	Basic-leucine zipper domain
CDD	cd14703	7.13E-21	155	204	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MQQPEHADPP GRAFPPPAAP ASAAARGAHH RRARSEVAFR LPDDLGLGGG GGPDGDAFDE 60 IGSEDDLFST FMDIEKISSS GPSDRDRDRA AETSSPPRPK HRHSSSVDGS GLFFSPGIGG 120 GAGKDAAASL AEVMEAKKAM TPEQLAELAA IDPKRAKRIL ANRQSAARSK ERKARYITEL 180 ERKVQTLQTE ATTLSAQLTL FQRDTTGLSA ENAELKIRLQ AMEQQAQLRD ALNDALKQEL 240 ERLKHATGEM TNSSETYNMR FQHVPYNSSF FPLSQQNASP HLGTTQLPPP YPPHPNVPNH 300 QMLSHPNTLP DIMQQESLGR LQGLDIGKGP LVVKSESSSI SASESSSTF*

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MQQPEHADPP GRAFPPPAAP ASAAARGAHH RRARSEVAFR LPDDLGLGGG GGPDGDAFDE  60
IGSEDDLFST FMDIEKISSS GPSDRDRDRA AETSSPPRPK HRHSSSVDGS GLFFSPGIGG  120
GAGKDAAASL AEVMEAKKAM TPEQLAELAA IDPKRAKRIL ANRQSAARSK ERKARYITEL  180
ERKVQTLQTE ATTLSAQLTL FQRDTTGLSA ENAELKIRLQ AMEQQAQLRD ALNDALKQEL  240
ERLKHATGEM TNSSETYNMR FQHVPYNSSF FPLSQQNASP HLGTTQLPPP YPPHPNVPNH  300
QMLSHPNTLP DIMQQESLGR LQGLDIGKGP LVVKSESSSI SASESSSTF*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed at high levels in roots, low level in leaf sheath, but not in leaf blade. Predominantly expressed in vascular tissues. {ECO:0000269\|PubMed:14704272}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.001G380700.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT033210	0.0	BT033210.1 Zea mays full-length cDNA clone ZM_BFb0176L19 mRNA, complete cds.
GenBank	BT063263	0.0	BT063263.1 Zea mays full-length cDNA clone ZM_BFc0045A20 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002467902.2	0.0	transcription factor RF2b
Swissprot	Q6S4P4	1e-168	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	A0A1B6QNC4	0.0	A0A1B6QNC4_SORBI; Uncharacterized protein
STRING	GRMZM2G062391_P01	1e-179	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	5e-69	bZIP family protein

Link Out ? help Back to Top
Phytozome	Sobic.001G380700.2.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064]