PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G361100.1.p
Common NameSb01g034500, SORBIDRAFT_01g034500
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family HSF
Protein Properties Length: 314aa    MW: 35158.5 Da    PI: 7.7271
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G361100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.65.5e-35481402103
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Fl+k++++++d+++++++sw e+g +fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F+kg 
  Sobic.001G361100.1.p  48 FLTKTFQLVDDHRTDHVVSWGEDGATFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADR---------WEFANEFFRKGA 127
                           9****************************************************************999.........************ PP

                           XXXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkkse 103
                           k+ll++i+r+ks+
  Sobic.001G361100.1.p 128 KHLLSEIHRRKSS 140
                           **********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.7E-3738131IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.8E-5744137IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.84E-3344137IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.4E-194871IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.3E-3148137IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-198698IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434087111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-1999111IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MAAFLVERPC SGGGGEKKTK TTTTTVVLSM DDMDMSSHAA KPAGPAPFLT KTFQLVDDHR  60
TDHVVSWGED GATFVVWRPP EFARDLLPNY FKHNNFSSFV RQLNTYGFRK IVADRWEFAN  120
EFFRKGAKHL LSEIHRRKSS SSCLQPPQKL QPPLPQHQPY LSLFMPPQPP RHPSCYNVQE  180
EDHGGKDFLA TLSEDNRELR RRNSLLLSEL AHMRRLYNDI IYFLQNHVEP VVPTPVATTT  240
TASCRLVELG STDSDTSAPT WRPRGDDEAP VKLFGVRLND GKKRRAQQVV PLEGKGDGDQ  300
GESIGDGDHN GHG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-223213713129Heat shock factor protein 1
5d5v_B6e-223213713129Heat shock factor protein 1
5d5v_D6e-223213713129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G361100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432491e-101AC243249.1 Panicum virgatum clone PV_ABa094-D05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465224.10.0heat stress transcription factor B-4d
SwissprotQ10KX81e-100HFB4D_ORYSJ; Heat stress transcription factor B-4d
TrEMBLC5WYR20.0C5WYR2_SORBI; Uncharacterized protein
STRINGSb01g034500.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.12e-62heat shock transcription factor B4