 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sobic.001G356000.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
| Family |
MYB |
| Protein Properties |
Length: 320aa MW: 33661.9 Da PI: 8.1503 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sobic.001G356000.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 55.2 | 1.6e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd+ lv +v+++G+g+W++++ g+ R+ k+c++rw +yl
Sobic.001G356000.1.p 14 KGPWTPEEDLVLVSYVQEHGPGNWRAVPGNTGLLRCSKSCRLRWTNYL 61
79******************************99************97 PP
|
| 2 | Myb_DNA-binding | 46.6 | 7.7e-15 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg ++ Ed l+v++ ++lG++ W++Ia++++ Rt++++k++w+++l
Sobic.001G356000.1.p 67 RGGFSDHEDRLIVHLQALLGNR-WAAIASYLP-DRTDNDVKNYWNTHL 112
7889******************.*********.************996 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 320 aa
Download sequence Send
to blast |
MGRPPCCDKE GVKKGPWTPE EDLVLVSYVQ EHGPGNWRAV PGNTGLLRCS KSCRLRWTNY 60
LRPGIRRGGF SDHEDRLIVH LQALLGNRWA AIASYLPDRT DNDVKNYWNT HLKKKLLLQH 120
QQRQRASTAA ASSLPSPSKG QWELKLQTDI DLARRALRDA LSVDAAAGPP GMAAAGSAPT 180
AAPAQPYAPT ARSVDGMLLD GWAAAPAAGR SCAVVGGTVI PAPAPATPPG ATDSTSGSSS 240
VLTTECSGSI SSASNKRAAP PVAAGHRLLL VHEENSTSAG QGEVPLSAIE SWLLEDAGGE 300
QKLPHESLLL DAALHNFGF*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1gv2_A | 2e-26 | 14 | 116 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
| 1h8a_C | 3e-26 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
| 1mse_C | 2e-26 | 14 | 116 | 4 | 105 | C-Myb DNA-Binding Domain |
| 1msf_C | 2e-26 | 14 | 116 | 4 | 105 | C-Myb DNA-Binding Domain |
| Search in ModeBase |
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in flowers, leaves and weakly in seed pods. {ECO:0000269|PubMed:1840903}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor. {ECO:0000305}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | EU962848 | 0.0 | EU962848.1 Zea mays clone 246006 myb transcription factor MYB30 mRNA, complete cds. |
