PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G341400.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GRAS
Protein Properties Length: 556aa    MW: 57680.6 Da    PI: 7.2358
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G341400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS195.34e-601735502374
                  GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn.....sseelaalkl. 83 
                           ++lL  cA av++g+l+++q+l   l elas +gd+++Rlaa+ + ALa+rl    ++  ++++++ + +  +      + +l+  +l 
  Sobic.001G341400.1.p 173 EQLLNPCAAAVEAGNLSRVQHLFYVLGELASFSGDANHRLAAHGLHALARRLPAaVGPAAAATVRVPPCECPTpafagAEPRLFRASLi 261
                           689*************************************************9966677777765544443333455433333333337 PP

                  GRAS  84 .fsevsPilkfshltaNqaIleavege......ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg.....skeel 158
                            f+evsP++ + + +aN aI +a+++       + +H++D+++s+G+QWp+Ll++L+ +p  + pps+R+T+ g++++       +   
  Sobic.001G341400.1.p 262 rFHEVSPWFALPNALANAAIAQAASRGgpaaepRPLHVVDLGVSHGVQWPTLLESLTRQPggRAPPSVRLTVAGAAATPpapfsASPPG 350
                           9**********************9987667777889************************656699*******9977668888888899 PP

                  GRAS 159 eetgerLakfAeelgvpfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe 245
                                 L ++A+++++++  +   a +l++++ + ++  p  gEal+V+l+++l +        ++er+e+L+ v++l+P++vvv+e +
  Sobic.001G341400.1.p 351 YDFSPHLIRYAKSINLQLAVSR--AASLDSVQ-HGFASPPggGEALVVCLQFRLGHAS------ADERTEILRKVRGLNPELVVVSELD 430
                           99***************99997..56788874.456666689**********999997......556899****************999 PP

                  GRAS 246 adhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaa 334
                               +++ + +f+  le  + +++s++a +    + r   Er+ll+ e+   va e a        +e Wrer+ +aGF++ +++++a+
  Sobic.001G341400.1.p 431 GGG-DGTAAGEFTARLELLWRFLESTSAAF----KGRDGDERRLLEAEAGTSVASEAAG-----AGKEAWRERMAAAGFEESAFGDEAV 509
                           876.88889*****************8887....5666667777888899999999998.....8889********************* PP

                  GRAS 335 kqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                           ++ak+llrk++ +++++     g++ l Wk++p+ ++S Wr
  Sobic.001G341400.1.p 510 ESAKSLLRKYDgGWEMSASGAAGAVALRWKGQPVSFCSLWR 550
                           ***********888888888999999**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.038146529IPR005202Transcription factor GRAS
PfamPF035141.4E-57173550IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MSMHISSSPC KIACMKPMSC HEQEHPELAA TTTNSSAFDW LEDSISFLTA DVDIAAGYGW  60
WSDPAAVQQD DIGSVVAQTL SPPAPLLTTT STSPPLAHTS PSIASPAVSS PSEPSSTKKR  120
KSPAHRASAH SGSNQRRRAD QDRPAGAGGG GGSKKGGSKG GGAGSDRDTR WAEQLLNPCA  180
AAVEAGNLSR VQHLFYVLGE LASFSGDANH RLAAHGLHAL ARRLPAAVGP AAAATVRVPP  240
CECPTPAFAG AEPRLFRASL IRFHEVSPWF ALPNALANAA IAQAASRGGP AAEPRPLHVV  300
DLGVSHGVQW PTLLESLTRQ PGGRAPPSVR LTVAGAAATP PAPFSASPPG YDFSPHLIRY  360
AKSINLQLAV SRAASLDSVQ HGFASPPGGG EALVVCLQFR LGHASADERT EILRKVRGLN  420
PELVVVSELD GGGDGTAAGE FTARLELLWR FLESTSAAFK GRDGDERRLL EAEAGTSVAS  480
EAAGAGKEAW RERMAAAGFE ESAFGDEAVE SAKSLLRKYD GGWEMSASGA AGAVALRWKG  540
QPVSFCSLWR PACSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B9e-2716855129420Protein SHORT-ROOT
5b3h_E9e-2716855129420Protein SHORT-ROOT
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G341400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7280150.0KJ728015.1 Zea mays clone pUT6151 GRAS transcription factor (GRAS74) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021318969.10.0nodulation-signaling pathway 1 protein
TrEMBLA0A1Z5S9930.0A0A1Z5S993_SORBI; Uncharacterized protein
STRINGSb01g032800.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61352854
Representative plantOGRP40821525
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.15e-77GRAS family protein