PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G314900.5.p
Common NameSb01g030620, SORBIDRAFT_01g030620
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family TALE
Protein Properties Length: 624aa    MW: 65724 Da    PI: 7.0452
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G314900.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.26.7e-093533901954
                           HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
              Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                           Fe   ++yps  ++  LA+++gL+ +qV++WF N R +
  Sobic.001G314900.5.p 353 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 390
                           664459******************************88 PP
2BELL925.7e-30211279371
                  BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 
                            elq+ kakL  +l+eV++rY++y+eq+++v++sFeavag  +a  Yt+lA+++iS+hFr+L+d +a q
  Sobic.001G314900.5.p 211 SELQRLKAKLYAMLQEVERRYRRYREQMRAVAGSFEAVAGEQAAVAYTRLASRTISKHFRSLRDGVAAQ 279
                           689***************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.6E-42147278IPR006563POX domain
PfamPF075261.2E-39153276IPR006563POX domain
PROSITE profilePS5007112.228331394IPR001356Homeobox domain
CDDcd000861.58E-12334395No hitNo description
SMARTSM003893.0E-9334398IPR001356Homeobox domain
SuperFamilySSF466891.67E-17335402IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.8E-28337400IPR009057Homeodomain-like
PfamPF059208.3E-18351390IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MAHDEQAGLA YADYFAAAAA AGAVATLVPE EEEDLHLYGV HHQHGVELFG PSRGHMLPAA  60
TMMAGGHAAA AAHGKAAALG LVDVDVASPV VGGHDFGDHH HRQQGLQAPL SLALHHHHHQ  120
QQLGGGGVPR HNQLSAAWPG PQQQQGQGAA WHLRGSRFLR PTQQLLQEFC TLPVDTTTTA  180
AASKQPASED GVGVGSSTSA PSAQIHAMSA SELQRLKAKL YAMLQEVERR YRRYREQMRA  240
VAGSFEAVAG EQAAVAYTRL ASRTISKHFR SLRDGVAAQM QVVRRALGEK DADGGVPAAG  300
GMVKGETTPR LRVIDQCLRQ HRAYQAGVLE SQPWRPQRGL PERAVSILRA WLFEHFLHPY  360
PSDVDKHILA RQTGLSRSQV SNWFINARVR LWKPMVEEMY SEEMKDPQEG GGGAACSNAN  420
NNSVNTSSYT SELGQQQLGH GGGASGVDGR GGERKPTRAQ LLVHDAGSLA SVVSIGSSSR  480
DQQQQMSSIN FGMMDHLDFD AYNDDPTAAG PGGPAGGFGA GGSGGVSLTL GLQHQHADDP  540
HGGVNIAFAG AAPSAAHEFL FMAGGGEQQM VAGGAVHPSH GHGHGHHGQF SAAGMQGDGV  600
PSSHYHRGLS AATGFQLLHD LAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A3e-17340397158Homeobox protein Meis1
4xrs_B3e-17340397158Homeobox protein Meis1
5bng_A3e-17340398159Homeobox protein Meis2
5bng_B3e-17340398159Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.1290.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G314900.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9570600.0EU957060.1 Zea mays clone 1581614 bell-like homeodomain protein 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465020.10.0homeobox protein BEL1 homolog
RefseqXP_021305140.10.0homeobox protein BEL1 homolog
RefseqXP_021305141.10.0homeobox protein BEL1 homolog
TrEMBLA0A1Z5S8I10.0A0A1Z5S8I1_SORBI; Uncharacterized protein
STRINGSb01g030620.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.16e-77TALE family protein