PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G314900.10.p
Common NameSb01g030620, SORBIDRAFT_01g030620
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family TALE
Protein Properties Length: 400aa    MW: 42370 Da    PI: 7.6529
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G314900.10.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox283.7e-091291661954
                            HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
               Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                            Fe   ++yps  ++  LA+++gL+ +qV++WF N R +
  Sobic.001G314900.10.p 129 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 166
                            664459******************************88 PP
2BELL734.8e-242551871
                   BELL 18 eVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71
                           +V++rY++y+eq+++v++sFeavag  +a  Yt+lA+++iS+hFr+L+d +a q
  Sobic.001G314900.10.p  2 QVERRYRRYREQMRAVAGSFEAVAGEQAAVAYTRLASRTISKHFRSLRDGVAAQ 55
                           79*************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075261.3E-19252IPR006563POX domain
PROSITE profilePS5007112.228107170IPR001356Homeobox domain
SMARTSM003893.0E-9110174IPR001356Homeobox domain
CDDcd000866.24E-13110171No hitNo description
SuperFamilySSF466898.55E-18111178IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-28113176IPR009057Homeodomain-like
PfamPF059204.7E-18127166IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MQVERRYRRY REQMRAVAGS FEAVAGEQAA VAYTRLASRT ISKHFRSLRD GVAAQMQVVR  60
RALGEKDADG GVPAAGGMVK GETTPRLRVI DQCLRQHRAY QAGVLESQPW RPQRGLPERA  120
VSILRAWLFE HFLHPYPSDV DKHILARQTG LSRSQVSNWF INARVRLWKP MVEEMYSEEM  180
KDPQEGGGGA ACSNANNNSV NTSSYTSELG QQQLGHGGGA SGVDGRGGER KPTRAQLLVH  240
DAGSLASVVS IGSSSRDQQQ QMSSINFGMM DHLDFDAYND DPTAAGPGGP AGGFGAGGSG  300
GVSLTLGLQH QHADDPHGGV NIAFAGAAPS AAHEFLFMAG GGEQQMVAGG AVHPSHGHGH  360
GHHGQFSAAG MQGDGVPSSH YHRGLSAATG FQLLHDLAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5bng_A9e-18116174159Homeobox protein Meis2
5bng_B9e-18116174159Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.1290.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G314900.10.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9570600.0EU957060.1 Zea mays clone 1581614 bell-like homeodomain protein 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465020.10.0homeobox protein BEL1 homolog
RefseqXP_021305140.10.0homeobox protein BEL1 homolog
RefseqXP_021305141.10.0homeobox protein BEL1 homolog
TrEMBLA0A1Z5S8J00.0A0A1Z5S8J0_SORBI; Uncharacterized protein
STRINGSb01g030620.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.23e-68BEL1-like homeodomain 2