PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G314900.1.p
Common NameSb01g030620, SORBIDRAFT_01g030620
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family TALE
Protein Properties Length: 635aa    MW: 66724 Da    PI: 6.8333
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G314900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.26.9e-093644011954
                           HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
              Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                           Fe   ++yps  ++  LA+++gL+ +qV++WF N R +
  Sobic.001G314900.1.p 364 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 401
                           664459******************************88 PP
2BELL925.8e-30222290371
                  BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 
                            elq+ kakL  +l+eV++rY++y+eq+++v++sFeavag  +a  Yt+lA+++iS+hFr+L+d +a q
  Sobic.001G314900.1.p 222 SELQRLKAKLYAMLQEVERRYRRYREQMRAVAGSFEAVAGEQAAVAYTRLASRTISKHFRSLRDGVAAQ 290
                           689***************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.6E-42158289IPR006563POX domain
PfamPF075261.3E-39164287IPR006563POX domain
PROSITE profilePS5007112.228342405IPR001356Homeobox domain
CDDcd000861.63E-12345406No hitNo description
SMARTSM003893.0E-9345409IPR001356Homeobox domain
SuperFamilySSF466891.71E-17346413IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.9E-28348411IPR009057Homeodomain-like
PfamPF059208.4E-18362401IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 635 aa     Download sequence    Send to blast
MAHDEQAGLA YADYFAAAAA AGAVATLVPE VDDDAVAGAG EEEEDLHLYG VHHQHGVELF  60
GPSRGHMLPA ATMMAGGHAA AAAHGKAAAL GLVDVDVASP VVGGHDFGDH HHRQQGLQAP  120
LSLALHHHHH QQQLGGGGVP RHNQLSAAWP GPQQQQGQGA AWHLRGSRFL RPTQQLLQEF  180
CTLPVDTTTT AAASKQPASE DGVGVGSSTS APSAQIHAMS ASELQRLKAK LYAMLQEVER  240
RYRRYREQMR AVAGSFEAVA GEQAAVAYTR LASRTISKHF RSLRDGVAAQ MQVVRRALGE  300
KDADGGVPAA GGMVKGETTP RLRVIDQCLR QHRAYQAGVL ESQPWRPQRG LPERAVSILR  360
AWLFEHFLHP YPSDVDKHIL ARQTGLSRSQ VSNWFINARV RLWKPMVEEM YSEEMKDPQE  420
GGGGAACSNA NNNSVNTSSY TSELGQQQLG HGGGASGVDG RGGERKPTRA QLLVHDAGSL  480
ASVVSIGSSS RDQQQQMSSI NFGMMDHLDF DAYNDDPTAA GPGGPAGGFG AGGSGGVSLT  540
LGLQHQHADD PHGGVNIAFA GAAPSAAHEF LFMAGGGEQQ MVAGGAVHPS HGHGHGHHGQ  600
FSAAGMQGDG VPSSHYHRGL SAATGFQLLH DLAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5bng_A3e-17351409159Homeobox protein Meis2
5bng_B3e-17351409159Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.1290.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G314900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9570600.0EU957060.1 Zea mays clone 1581614 bell-like homeodomain protein 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465020.10.0homeobox protein BEL1 homolog
RefseqXP_021305140.10.0homeobox protein BEL1 homolog
RefseqXP_021305141.10.0homeobox protein BEL1 homolog
TrEMBLC5WUF20.0C5WUF2_SORBI; Uncharacterized protein
STRINGSb01g030620.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38143764
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.18e-77TALE family protein