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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.001G297200.1.p |
Common Name | Sb01g029000, SORBIDRAFT_01g029000 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
HD-ZIP |
Protein Properties |
Length: 347aa MW: 37679.1 Da PI: 8.8256 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.001G297200.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 60.8 | 2.2e-19 | 194 | 248 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++k+q +Le+ F+++++++ ++++ LAk+l+L+ rqV vWFqNrRa+ k
Sobic.001G297200.1.p 194 RKKLRLSKDQAAVLEDSFKEHNTLNPKQKAALAKQLNLKPRQVEVWFQNRRARTK 248
788899***********************************************98 PP
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2 | HD-ZIP_I/II | 127.6 | 5.3e-41 | 194 | 283 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89
+kk+rlsk+q+++LE+sF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL++ev+eLr
Sobic.001G297200.1.p 194 RKKLRLSKDQAAVLEDSFKEHNTLNPKQKAALAKQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQREVAELR- 281
69*************************************************************************************9. PP
HD-ZIP_I/II 90 el 91
+l
Sobic.001G297200.1.p 282 AL 283
55 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 347 aa
Download sequence Send
to blast |
MEMAVNARDE EKKYDGDDNH LGLGLSLSLG IATTAATPVE VDPPPRQQQQ QRAISVAPIS 60 SLPAPQWWNG PAGLFFSPSS GMKMDPSLER KHQHQQQQQQ QAAATSYSHD MPFLRGIDVN 120 RRATAGETRR GRSCSEDEEP GASSPNSTLS SLSGKRAAPA RSSGEVDREA DGHTPRAGGG 180 GSDDEDSGAG GGSRKKLRLS KDQAAVLEDS FKEHNTLNPK QKAALAKQLN LKPRQVEVWF 240 QNRRARTKLK QTEVDCEFLK RCCETLTEEN RRLQREVAEL RALKLVAPHH YARMPPPTTL 300 TMCPSCERLA SAPADEAVAG RTAAPTGPWG PLPVRPVFVD GPARRS*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 192 | 198 | SRKKLRL |
2 | 242 | 250 | RRARTKLKQ |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in root provascular and vascular cylinder, provascular and vascular strands of leaves, provascular and vascular strands of the whole panicle, in mature embryo provascular bundles of scutellum and embryonic axis and provascular and vascular strands of young immature spikelet organs. Expressed in differentiating and differentiated xylem and phloem elements, and in outer and inner bundle sheath cells of all vascular bundles. Expressed in auricles, ligules, culm, guard cells brac hairs and pollen. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:9076993}. |
Uniprot | TISSUE SPECIFICITY: Expressed in root provascular and vascular cylinder, provascular and vascular strands of leaves, provascular and vascular strands of the whole panicle, in mature embryo provascular bundles of scutellum and embryonic axis and provascular and vascular strands of young immature spikelet organs. Expressed in differentiating and differentiated xylem and phloem elements, and in outer and inner bundle sheath cells of all vascular bundles. Expressed in auricles, ligules, culm, guard cells brac hairs and pollen. {ECO:0000269|PubMed:10934011, ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:9076993}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription repressor involved leaf development. Binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. May act as a regulatory switch to specify provascular cell fate. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:10934011, ECO:0000269|PubMed:9076993}. |
UniProt | Probable transcription repressor involved leaf development. Binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. May act as a regulatory switch to specify provascular cell fate. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:9076993}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By auxin and sucrose in primary root apical region. By wounding in leaves. {ECO:0000269|PubMed:10732669}. |
UniProt | INDUCTION: By auxin and sucrose in primary root apical region. By wounding in leaves. {ECO:0000269|PubMed:10934011}. |
Publications
? help Back to Top |
- Scarpella E,Boot KJ,Rueb S,Meijer AH
The procambium specification gene Oshox1 promotes polar auxin transport capacity and reduces its sensitivity toward inhibition. Plant Physiol., 2002. 130(3): p. 1349-60 [PMID:12428000] - Scarpella E,Rueb S,Meijer AH
The RADICLELESS1 gene is required for vascular pattern formation in rice. Development, 2003. 130(4): p. 645-58 [PMID:12505996] - Rice Chromosome 10 Sequencing Consortium
In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] - Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Scarpella E,Simons EJ,Meijer AH
Multiple regulatory elements contribute to the vascular-specific expression of the rice HD-Zip gene Oshox1 in Arabidopsis. Plant Cell Physiol., 2005. 46(8): p. 1400-10 [PMID:15964905] - Meijer AH,Ouwerkerk PB,Hoge JH
Vectors for transcription factor cloning and target site identification by means of genetic selection in yeast. Yeast, 1998. 14(15): p. 1407-15 [PMID:9848232]
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