|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Sobic.001G294700.1.p |
Common Name | Sb01g028790, SORBIDRAFT_01g028790 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
Family |
Trihelix |
Protein Properties |
Length: 323aa MW: 34272.6 Da PI: 10.0995 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.001G294700.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 73.9 | 2.8e-23 | 58 | 147 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83
+Wt++e+laLiea+r+++erlr+g+l++++W++v++ + + ++s +qC++k+e+l+kry++++ ++ +r+++ ++p+f
Sobic.001G294700.1.p 58 CWTHEETLALIEAYRDRWERLRKGNLRAADWDDVANTVtarcgrFPTATHKSGVQCRHKIEKLRKRYRAERSRSAGRSKG--PKWPFFP 144
8*************************************99998888899**************************98443..47****9 PP
trihelix 84 qle 86
l+
Sobic.001G294700.1.p 145 LLH 147
886 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 323 aa
Download sequence Send
to blast |
MSSSSSDAAR DDVVSSPDLP PLAAPVAAAA AAAAAAASSG GGLGLGGGGS GRRLPPPCWT 60 HEETLALIEA YRDRWERLRK GNLRAADWDD VANTVTARCG RFPTATHKSG VQCRHKIEKL 120 RKRYRAERSR SAGRSKGPKW PFFPLLHDLA GGGVPDPSPN AIVKIKTKGP APPGSPPSPV 180 SSPSSSEEGV RSRSLHGLIS NGGAGSGLRF TIPKASRTKP AAVAAVKPER SGGVEDDAES 240 EAMAEVAAAL RAVGEGFLRM EERRLELSLQ MEKERMESEM KRTQTMLDAQ QLFLEAFLGK 300 QQQQQQHKKA RVSPPSDAME ED*
|
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | BT040727 | 0.0 | BT040727.1 Zea mays full-length cDNA clone ZM_BFc0120O10 mRNA, complete cds. |
GenBank | EU959937 | 0.0 | EU959937.1 Zea mays clone 220734 mRNA sequence. |