PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G294700.1.p
Common NameSb01g028790, SORBIDRAFT_01g028790
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family Trihelix
Protein Properties Length: 323aa    MW: 34272.6 Da    PI: 10.0995
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G294700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix73.92.8e-2358147186
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                           +Wt++e+laLiea+r+++erlr+g+l++++W++v++ +        +  ++s +qC++k+e+l+kry++++ ++ +r+++   ++p+f 
  Sobic.001G294700.1.p  58 CWTHEETLALIEAYRDRWERLRKGNLRAADWDDVANTVtarcgrFPTATHKSGVQCRHKIEKLRKRYRAERSRSAGRSKG--PKWPFFP 144
                           8*************************************99998888899**************************98443..47****9 PP

              trihelix  84 qle 86 
                            l+
  Sobic.001G294700.1.p 145 LLH 147
                           886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.8E-2257148No hitNo description
PROSITE profilePS500906.09859121IPR017877Myb-like domain
SMARTSM005952.1E-566150IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MSSSSSDAAR DDVVSSPDLP PLAAPVAAAA AAAAAAASSG GGLGLGGGGS GRRLPPPCWT  60
HEETLALIEA YRDRWERLRK GNLRAADWDD VANTVTARCG RFPTATHKSG VQCRHKIEKL  120
RKRYRAERSR SAGRSKGPKW PFFPLLHDLA GGGVPDPSPN AIVKIKTKGP APPGSPPSPV  180
SSPSSSEEGV RSRSLHGLIS NGGAGSGLRF TIPKASRTKP AAVAAVKPER SGGVEDDAES  240
EAMAEVAAAL RAVGEGFLRM EERRLELSLQ MEKERMESEM KRTQTMLDAQ QLFLEAFLGK  300
QQQQQQHKKA RVSPPSDAME ED*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G294700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0407270.0BT040727.1 Zea mays full-length cDNA clone ZM_BFc0120O10 mRNA, complete cds.
GenBankEU9599370.0EU959937.1 Zea mays clone 220734 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002467473.10.0trihelix transcription factor ASIL1
TrEMBLC5WRH00.0C5WRH0_SORBI; Uncharacterized protein
STRINGSb01g028790.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56893250
Representative plantOGRP40591122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.14e-21Trihelix family protein