PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G278300.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 341aa    MW: 36935.5 Da    PI: 5.6191
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G278300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.52e-12170215555
                           HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           h  +Er+RR+++N+ f+ L +++P       +K +K+++L  +++Y+++L+
  Sobic.001G278300.2.p 170 HVVAERKRREKMNHQFAALASIIPDI-----TKTDKVSVLGSTIDYVHHLR 215
                           8899*********************7.....7*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.18E-15156226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.538165214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-16169228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-10170214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.60E-12170219No hitNo description
SMARTSM003531.6E-14171220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MDSTTSHKSL EELENEEVGE LDFIDALTMQ QLAESLADEL CWDQPIHHQE QQQQQVELLD  60
QRQKRTNTNT TGFPFLGDMG RRPYAEADEV FLPTAPATIN AGGNDSLFSF TGGGKSEQLM  120
SFSTASREPK QKESNGGGNT PAAAGRTPLT TMEGSSKGRR RPSSGVVHEH VVAERKRREK  180
MNHQFAALAS IIPDITKTDK VSVLGSTIDY VHHLRGRLKA LQAEHQSSTG STAESPPLDA  240
RCCVGSLDDD LDGGVTAMSP KIEAEVRGTT VLLRVVCREK KGVLIMLLKE LEKHGLSTIN  300
TNVLLLAGSS LNITITAQIE DGFSTAVELV NNLNAALKKF *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158177RRRPSSGVVHEHVVAERKRR
2173178ERKRRE
3174179RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G278300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021307621.10.0transcription factor bHLH19
TrEMBLA0A1Z5S7Y40.0A0A1Z5S7Y4_SORBI; Uncharacterized protein
STRINGSb01g027411.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138961725
Representative plantOGRP1298245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.16e-25bHLH family protein