PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.001G271100.2.p

Common Name

Sb01g026610, SORBIDRAFT_01g026610

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

bHLH

Protein Properties

Length: 205aa MW: 20976.7 Da PI: 7.1908

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.001G271100.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.9	7.6e-08	163	190	3	30
HHHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 3 rahnerErrRRdriNsafeeLrellPka 30 r+h+e+ rr R+riNs +++Lr+llP+ Sobic.001G271100.2.p 163 RSHSEAKRRHRQRINSHLSRLRSLLPNT 190 58************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.972	160	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.6E-5	163	190	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.20E-5	163	189	No hit	No description
SuperFamily	SSF47459	6.69E-5	164	192	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-4	164	190	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MWEGGGIHDS LHEALLLQAT GSGAADYGHG GGGGPASLLP PWLSPAAMPG GFSSYVMAPH 60 HAHHLQPGPL GGAAESSFGF GDGGGYSEGE VGQFGVFGPD TPLPLLPLHG LALAAGGSRG 120 GTTAALMLHG PRMVSGLLGT LQAELGRMTA KEIMDAKALA ALRSHSEAKR RHRQRINSHL 180 SRLRSLLPNT TKVLFSDINA DEVN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.001G271100.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004666	4e-60	AP004666.4 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0431A03.
GenBank	AP014964	4e-60	AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBank	CP012616	4e-60	CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002445543.1	4e-87	transcription factor AIG1
TrEMBL	A0A1B6QLD3	1e-141	A0A1B6QLD3_SORBI; Uncharacterized protein
STRING	Sb01g026610.1	1e-140	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	6e-18	bHLH family protein

Link Out ? help Back to Top
Phytozome	Sobic.001G271100.2.p
Entrez Gene	8083871