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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.001G271100.1.p | ||||||||
Common Name | Sb01g026610, SORBIDRAFT_01g026610 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bHLH | ||||||||
Protein Properties | Length: 206aa MW: 21060.8 Da PI: 7.1908 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 23.9 | 7.5e-08 | 163 | 190 | 3 | 30 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 3 rahnerErrRRdriNsafeeLrellPka 30 r+h+e+ rr R+riNs +++Lr+llP+ Sobic.001G271100.1.p 163 RSHSEAKRRHRQRINSHLSRLRSLLPNT 190 58************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.496 | 160 | 205 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.8E-5 | 163 | 190 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.21E-5 | 163 | 189 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.4E-4 | 164 | 190 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.82E-5 | 164 | 192 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MWEGGGIHDS LHEALLLQAT GSGAADYGHG GGGGPASLLP PWLSPAAMPG GFSSYVMAPH 60 HAHHLQPGPL GGAAESSFGF GDGGGYSEGE VGQFGVFGPD TPLPLLPLHG LALAAGGSRG 120 GTTAALMLHG PRMVSGLLGT LQAELGRMTA KEIMDAKALA ALRSHSEAKR RHRQRINSHL 180 SRLRSLLPNT TKVLFSDINA DEISP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.001G271100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004666 | 4e-60 | AP004666.4 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0431A03. | |||
GenBank | AP014964 | 4e-60 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012616 | 4e-60 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002445543.1 | 3e-87 | transcription factor AIG1 | ||||
TrEMBL | A0A1B6QLB8 | 1e-141 | A0A1B6QLB8_SORBI; Uncharacterized protein | ||||
STRING | Sb01g026610.1 | 1e-140 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP24675 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 6e-18 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.001G271100.1.p |
Entrez Gene | 8083871 |