PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G261501.1.p
Common NameSb0012s010230, SORBIDRAFT_0012s010230, SORBI_K006800
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family CAMTA
Protein Properties Length: 1023aa    MW: 113534 Da    PI: 5.7916
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G261501.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-11728.6e-54211382118
                  CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahse 89 
                           lke ++rwl++ ei++iL+n+++++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kk d ktv+E+he+LK g+++vl+cyYah+e
  Sobic.001G261501.1.p  21 LKEaQHRWLRPAEICEILKNYRNFRIAPEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKNDQKTVKEAHERLKSGSIDVLHCYYAHGE 109
                           45559************************************************************************************ PP

                  CG-1  90 enptfqrrcywlLeeelekivlvhylevk 118
                           en +fqrr+yw+Lee++ +ivlvhyle+k
  Sobic.001G261501.1.p 110 ENINFQRRTYWMLEEDYMHIVLVHYLETK 138
                           **************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.86117143IPR005559CG-1 DNA-binding domain
SMARTSM010762.7E-7220138IPR005559CG-1 DNA-binding domain
PfamPF038596.8E-4823136IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.102.7E-4446533IPR013783Immunoglobulin-like fold
PfamPF018338.0E-6447525IPR002909IPT domain
SuperFamilySSF812967.4E-16447533IPR014756Immunoglobulin E-set
CDDcd002041.74E-13592739No hitNo description
SuperFamilySSF484038.08E-17615741IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.204.2E-17642742IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.29648741IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.683648680IPR002110Ankyrin repeat
PROSITE profilePS500888.736681713IPR002110Ankyrin repeat
SuperFamilySSF525401.78E-8840893IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.086842864IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.407843872IPR000048IQ motif, EF-hand binding site
PfamPF006120.0032844863IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0022865887IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.56866890IPR000048IQ motif, EF-hand binding site
PfamPF006122.0E-4868887IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010150Biological Processleaf senescence
GO:0042742Biological Processdefense response to bacterium
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0001077Molecular Functiontranscriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1023 aa     Download sequence    Send to blast
MASAEARRLA VVPQLEIEQI LKEAQHRWLR PAEICEILKN YRNFRIAPEP PNRPPSGSLF  60
LFDRKVLRYF RKDGHNWRKK NDQKTVKEAH ERLKSGSIDV LHCYYAHGEE NINFQRRTYW  120
MLEEDYMHIV LVHYLETKGG KSSRARGNNN IIQGTAVDSP VSQLPSQTME GESSLSGQAS  180
EYEEAESADI YSGAGYNSFT WMQQHENGTG PVTNSSVFSS YTPASSVGNY QGLHATQNTS  240
FYPVNQHNSP LILNGSSAML GTNGRANQTD LPSWNSVIEL DEPVQMPHLQ FPVPPDQSAT  300
TEGLGVDYLT FDEVYSDGLS LKDIGAAGTH GESYLQFSSA TGDLSATENS FPQQNDGSLE  360
AAIGYPFLKT QSSNLSDILK DSFKKTDSFT RWMSKELPEV EDSQIHSSSG GFWSTEEANN  420
IIEASSREPL DQFTVSPMLS QDQLFSIVDF APNWTYVGSK TKILVAGSIL NDSQINEGCK  480
WSCMFGEVEV PAKVLADGTL ICYSPQHRPG RVPFYITCSN RLACSEVREF EFRPTVSQYM  540
DAPSPHGETN KVYFQIRLDK LLSLGPDEYQ ATVSNPSLEM IDLSKKISSL MASNDEWSNL  600
LKLAVDNEPS TADQHDQFAE NLIKEKLHVW LLNKVGMGGK GPSVLDDEGQ GVLHLAAALG  660
YDWAIRPTLA AGVNINFRDV HGWTALHWAA FCGRERTVVA LIALGAAPGA LTDPTPDFPG  720
STPADLASAN GQKGISGFLA ESSLTSHLQA LNLKEANMSQ ISGLPGIGDV TERDSLQPPS  780
GDSLGPVRNA AQAAAQIYQV FRVQSFQRKQ AAQYEDDKGG MSDERALSLL SVKPPKSGQL  840
DPLHSAATRI QNKFRGWKGR KEFLLIRQRI VKIQAHVRGH QVRKHYRKIV WSVGIVEKVI  900
LRWRRRGAGL RGFRSTEGSV ESSSGGTSSS SIQDKPSGDD YDFLQEGRKQ TEERLQKALA  960
RVKSMAQYPE ARDQYQRILT VVSKMQESQA MQEKMLEESA EMDFMSEFKE LWDDDTPIPG  1020
YF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.57930.0embryo| leaf| ovary| panicle| pollen
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00042PBMTransfer from AT2G22300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G261501.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021319049.10.0calmodulin-binding transcription activator 3 isoform X1
TrEMBLA0A1Z5S7V00.0A0A1Z5S7V0_SORBI; Uncharacterized protein
STRINGSb0012s010230.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Representative plantOGRP5621565
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains