PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G261448.1.p
Common NameSORBI_K005500
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 325aa    MW: 35157.5 Da    PI: 7.7935
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G261448.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.14.3e-15118169155
                           CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++Y+++L+
  Sobic.001G261448.1.p 118 QRMTHIAVERNRRRQMNEYLAVLRSLMPPS---YGQRGDQASIVGGAINYVRELE 169
                           79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.97E-15116173No hitNo description
Gene3DG3DSA:4.10.280.101.0E-14116173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.28E-17116181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.298117168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-12118169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-12123174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MALLDAVVHP SQPQGHLGYG HRDYCSYGAP FFWSDATGHG DNHVPYAGDW DPFLLASLVH  60
NAEESGKVVG SSKASPEREV ALSSAIEPPS SPVMTTTAKR KRRRANKVVK NEEEMESQRM  120
THIAVERNRR RQMNEYLAVL RSLMPPSYGQ RGDQASIVGG AINYVRELEQ LLQSLEVHRS  180
LQEHSSNSKS CNPFAAFFSF PQYSSATSSS HSGAGNHTIK VSAGSSRSPS SSVVTADIEA  240
SMVDGHASVK VQAPRRPRQL LRLAAGLQQL GLTTLHLNVS TAGTMVMYAF SLKVEVDCKL  300
GSVEEIAAAV HEILGRIQDE AGFS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198103KRKRRR
299103RKRRR
3118129RMTHIAVERNRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G261448.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0588092e-59AK058809.1 Oryza sativa Japonica Group cDNA clone:001-003-C09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002489234.20.0transcription factor bHLH96
SwissprotQ9C7T42e-70BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A109NDP60.0A0A109NDP6_SORBI; Uncharacterized protein
STRINGSb0012s004780.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Representative plantOGRP25315131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-54bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]