PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G243800.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 312aa    MW: 34461.2 Da    PI: 9.265
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G243800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1346.4e-11103143340
                           XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHH CS
                bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLea 40 
                           ++k +rr+++NReAAr+sR+RKka+i++Le+   k ++Le+
  Sobic.001G243800.1.p 103 RDKIQRRLAQNREAARKSRLRKKAYIQNLETsrmKLAQLEQ 143
                           7899*************************983224444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.2E-4101161IPR004827Basic-leucine zipper domain
PfamPF001707.8E-8103142IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.956103145IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.5E-7105148No hitNo description
Gene3DG3DSA:1.20.5.1707.3E-8106146No hitNo description
PROSITE patternPS000360108123IPR004827Basic-leucine zipper domain
PfamPF141446.9E-27193267IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MGIYERQRHL VAAGVSVWGE PFRPDADALP LSAVVPTVTL VTTPAPPLDV VEAEEVKFGK  60
HQLLQAQQYD VPPQVEEEAA PAPPPPSSDS FGHDHDHDAA RPRDKIQRRL AQNREAARKS  120
RLRKKAYIQN LETSRMKLAQ LEQELTMARR QQQHGAYGVG EGGVAAATAA VDPRVAAFEL  180
DYTRWVEEQG RQATELRAAL QSHAPEVQLR VLVDAGLAHY GALFQAKAQA AQSDAFFVLS  240
GVWRAPAERF FLWIGGFRPF ELLKVLAPRL DPLMDHQAAE VRKLILTRRQ AARGLLALAD  300
YGQRLRALSS L*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.204340.0shoot
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G243800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021314235.10.0transcription factor TGAL10
SwissprotQ6ZBS84e-77TGL10_ORYSJ; Transcription factor TGAL10
TrEMBLA0A1B6QKQ00.0A0A1B6QKQ0_SORBI; Uncharacterized protein
STRINGSb07g004900.11e-172(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35713877
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65210.66e-62bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]