PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G237600.1.p
Common NameSb01g021000, SORBIDRAFT_01g021000
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family E2F/DP
Protein Properties Length: 341aa    MW: 36647.9 Da    PI: 6.7927
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G237600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP85.15.5e-2784171271
               E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse.....................dvknkrRRiYDilNVLealnliekkekneir 68 
                           ++++Lr+++++   ++ek+e+ g++t+neva+eLv+e                     d+kn+rRR+YD+lNVL+a+++i+k +k+ei+
  Sobic.001G237600.1.p  84 NGRGLRQFSMR---VCEKVESkGRTTYNEVADELVAEfsdpninidspdpdnpsaqqyDEKNIRRRVYDALNVLMAMEIISK-DKKEIQ 168
                           789********...*****999************************************************************.****** PP

               E2F_TDP  69 wkg 71 
                           w+g
  Sobic.001G237600.1.p 169 WRG 171
                           *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094042.1E-1214340IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.103.1E-4479177IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.3E-3883171IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023198.6E-2585171IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.18E-1986172IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144581.16E-40176279IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440748.89E-40178291No hitNo description
SMARTSM011382.6E-80178338IPR014889Transcription factor DP, C-terminal
PfamPF087818.2E-40179310IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0007049Biological Processcell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MVSGAGPSGG AAHSASTGGG GGSPSDRGGA APSASASVST PASESTVARR LNGLDLQGDD  60
APSSQPAASK KKKKGSRAVG PDKNGRGLRQ FSMRVCEKVE SKGRTTYNEV ADELVAEFSD  120
PNINIDSPDP DNPSAQQYDE KNIRRRVYDA LNVLMAMEII SKDKKEIQWR GLPKTSMNDI  180
EELKTEVIRL KGRIDKKAAY LQDLQDQYVC LQNLVRRNEQ LYGSGDAPSG GVALPFILVK  240
TRPHATVEVE ISEDMQLVHF DFNSTPFELQ DDTFVLKAMG LSGKEENDCT QAPVVNGGEC  300
SSTPNNYWHQ SPQPPGPRGV RVPNSPPIPG ILKGRVKHEH *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-3477176193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the whole cell cycle. {ECO:0000269|PubMed:11669580}.
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16920782}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G237600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0365660.0BT036566.1 Zea mays full-length cDNA clone ZM_BFb0123L22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002464568.10.0transcription factor-like protein DPB isoform X1
SwissprotQ9FNY21e-128DPB_ARATH; Transcription factor-like protein DPB
TrEMBLC5X0H50.0C5X0H5_SORBI; Uncharacterized protein
STRINGSb01g021000.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Representative plantOGRP25111734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-118Transcription factor DP