PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G234700.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 104aa    MW: 10975.2 Da    PI: 6.6567
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G234700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.17.6e-122054946
                   AP2  9 dkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaa 46
                          ++ +g+++AeIrdp  +   +r++lg+ +taeeAa+aa
  Sobic.001G234700.1.p 20 RP-WGKFAAEIRDPERG--GARVWLGTLDTAEEAARAA 54
                          67.**********8333..4*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.881053IPR001471AP2/ERF domain
PRINTSPR003673.1E-61425IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-111858IPR016177DNA-binding domain
SMARTSM003805.1E-71969IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-151956IPR001471AP2/ERF domain
PfamPF008471.7E-61954IPR001471AP2/ERF domain
PRINTSPR003673.1E-63753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MEDGNGKDTG GGGTKPCSKR PWGKFAAEIR DPERGGARVW LGTLDTAEEA ARAAGRVAAG  60
NSSPGPSASL RRMGRWNGER IELECLDDKV LDDLLDKDKY GGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-13477576Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G234700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003573983.18e-27ethylene-responsive transcription factor ERF096
SwissprotQ9LTC54e-17ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLC5X0D72e-66C5X0D7_SORBI; Uncharacterized protein
STRINGBRADI3G27690.13e-26(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.12e-11ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]