PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G195550.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family FAR1
Protein Properties Length: 746aa    MW: 87347 Da    PI: 7.1515
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G195550.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR152.51.7e-1698186291
                  FAR1   2 fYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 
                           f+n+YA+ +GF++ +++  ++   krn+e+tk t +C+k gk+e+ k++   e++  a ++   k k++ k+   + w++++l+leHnH
  Sobic.001G195550.1.p  98 FFNFYAYLAGFETAVAHVFRTasrKRNNEVTKVTVKCNKFGKEEQPKTT---EQQGAAADKEIGKKKVVFKEV-GDIWKIIRLDLEHNH 182
                           9***************9998888899*****************999888...666666667777889999888.9************** PP

                  FAR1  88 elap 91 
                           el+p
  Sobic.001G195550.1.p 183 ELQP 186
                           **86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.6E-1598186IPR004330FAR1 DNA binding domain
PfamPF105511.8E-36306399IPR018289MULE transposase domain
PROSITE profilePS5096610.212568606IPR007527Zinc finger, SWIM-type
SMARTSM005751.7E-5581608IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 746 aa     Download sequence    Send to blast
MEIEEIHDHT RIQEESLTNT TSEVIETYGE SKRNYLVPPE DVDSIEVDGS QKLTEEGIDD  60
FIRKEHLAAS EGNNANIDSK YTPQLGMEFQ TKDQAQHFFN FYAYLAGFET AVAHVFRTAS  120
RKRNNEVTKV TVKCNKFGKE EQPKTTEQQG AAADKEIGKK KVVFKEVGDI WKIIRLDLEH  180
NHELQPGQRE QQFSGHKYMT DLEKTLIRTL NDSNIPTRKM ISILSYLRGG PTALPVKKKD  240
VSNFRTKINR EVRGSDMTKV LDSFRVKKTE DPTFFYKFEL DEENKVKNIF WRDGSTLRYY  300
ADYGDCVSFD TTYMTNRYRL PFAPFVGITG HAQTCIFGCA FLHDETTTTF KWVFETFLEA  360
MGGKHPKTII TDQDKAMKAA IEDVFPNTRH RNCLFHIKTK CYSKNIKIFA AKEGLYEEFE  420
DIVNNCVTEE EFEGLWGKMI EERELQNNKY FTKMWETRKR FIPVYYKKDF FPFIQTTSRK  480
YQRIIEAIDR AENLEDHYSS QKKPKELLFG YMFEKQAHEL YNRNVYKKFQ IQLKATSTMT  540
YQEIEEGKAF EVWQRRNQVH QIQNIRKYTV LTDLTEGKEQ FDCICAKFSK DGILCSHVLK  600
IIIEKEISNI PEMYIIDRWR KKEMRMLKQP MGEDTIATSS LLRYNVLSRK STVLNSKAAK  660
REEATNYLMA EMDRIEAHLN QLLEPPARDQ NHNEETANQE IQTQATSVQN EIEDPETATQ  720
KGRPELPKRM KTQIEKLNSF YCVQQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G195550.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002439945.20.0protein FAR1-RELATED SEQUENCE 5
RefseqXP_021319297.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A1Z5S6T50.0A0A1Z5S6T5_SORBI; Uncharacterized protein
STRINGSb09g023170.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-83FAR1-related sequence 5