PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G166700.1.p
Common NameSb01g014580, SORBIDRAFT_01g014580
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 301aa    MW: 33253 Da    PI: 5.2198
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G166700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.43.9e-112262661055
                           HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           r+RR+riN+++  L+ l+P+      +K++ +++Le+AveY+k Lq
  Sobic.001G166700.1.p 226 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVEYVKFLQ 266
                           9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.24E-12214270No hitNo description
SuperFamilySSF474594.32E-15214282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.491216265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-13216279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-11222271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-8226266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MESGGVIAEP SWSLVDVPFQ AEESEIMEQL LGTFPSNGEE DHQEFPWPIQ ASNSFYFHCN  60
ASASTYSSTS SNGSGSLSLI MPSEHGGYYL SDSCTAPLHL NMVQNQGAAL FMDSILNPSY  120
GSCDSSCDDL GDSSMNLLDS IGTSDKRKHL EQGKLDGHTR SRKYAKKSDS KRAKKIMQRE  180
DGQSLSSCTF ENDSNASQGR PVSDNLGGKA KADRRSATES QSLYARKRRE RINERLRILQ  240
NLVPNGTKVD ISTMLEEAVE YVKFLQLQIK LLSSDEMWMY APIAYNGMNI GIDLNLSQRR  300
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G166700.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002464227.10.0transcription factor bHLH85
TrEMBLC5WSA80.0C5WSA8_SORBI; Uncharacterized protein
STRINGSb01g014580.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43103270
Representative plantOGRP10481454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.12e-37bHLH family protein