PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G162100.1.p
Common NameSb01g014180, SORBIDRAFT_01g014180
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 353aa    MW: 37889.7 Da    PI: 10.2924
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G162100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.44.6e-31286343359
                           -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +d +++++tYegeHnh+
  Sobic.001G162100.1.p 286 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDSSMLIVTYEGEHNHT 343
                           9*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.7E-17236282IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.0E-33272343IPR003657WRKY domain
PROSITE profilePS5081129.998279345IPR003657WRKY domain
SuperFamilySSF1182907.19E-27282343IPR003657WRKY domain
SMARTSM007741.6E-37284344IPR003657WRKY domain
PfamPF031068.3E-27286342IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MEEVEEANRE AVESCHRVLA LLSQPHDPAQ VRSIALGTDE ACAKFRKVVS LLSNGGVGVG  60
EAGPSGASGS GSHPRAKLVS RRQNPGFLTQ KGFLDSNTPV VVLNSAHPSP ASAQVYPRTA  120
GALDAQGVHP LGGPPKLVQP LSAHFQFGNV SSRYQFQNQQ QQQQKLQAEM FKRSNSGVNL  180
KFESTSGTGT MSSARSFLSS LSMDGSVASL DGKSSSFHLI GGPAMSDPVN VQQAPRRRCT  240
GRGEDGTGKC AVTGRCHCSK RSRKLRVKRS IKVPAISNKI ADIPPDEYSW RKYGQKPIKG  300
SPHPRGYYKC SSVRGCPARK HVERCVDDSS MLIVTYEGEH NHTRMPTQSA QV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-21277346775WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G162100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0698720.0BT069872.1 Zea mays full-length cDNA clone ZM_BFb0311A08 mRNA, complete cds.
GenBankBT0873360.0BT087336.1 Zea mays full-length cDNA clone ZM_BFb0044E21 mRNA, complete cds.
GenBankEU9532910.0EU953291.1 Zea mays clone 1397139 WRKY transcription factor 21 mRNA, complete cds.
GenBankKJ7275680.0KJ727568.1 Zea mays clone pUT5428 WRKY transcription factor (WRKY102) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002464211.10.0protein WRKY1 isoform X1
SwissprotQ93WU64e-90WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBLC5WS580.0C5WS58_SORBI; Uncharacterized protein
STRINGSb01g014180.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28593887
Representative plantOGRP18171541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-60WRKY DNA-binding protein 21
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]