PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G158900.3.p
Common NameSb01g013843, SORBIDRAFT_01g013843
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 541aa    MW: 55912.8 Da    PI: 6.5699
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G158900.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.68.2e-17332378455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  Sobic.001G158900.3.p 332 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 378
                           6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.0E-20326383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-20326392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.457328377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.95E-17331382No hitNo description
PfamPF000104.0E-14332378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-18334383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MNQFVPDWSN MGDTSRPLGE DDDLIELLWC NGHVVMQSQT HRKVPPRPEK QAAVVAPAPP  60
APASVPQEDE GGLWFPFALA DSLDKDIFSE FFYEAPAPAA VAAAAAPVAP VASGGVGTET  120
DAGKSCRDDV PAGADRRGAC PVVSEDPCDL MPPPKSTPAS CSRQQTMSLP NGGGDNAGDL  180
SDLVVRAGSA GKSAAAAAAV AEAGASSMLS AIGSSICGSN QVLVQRAVGA PGRASGSGSG  240
TANANAMGGG RGNEASSSGR STYCFGTATT TTTTTTTTEP TSTSNRSSKR KRLDTEDSES  300
PSEDAESESA AMLARKPPQK MTTARRSRAA EVHNLSERRR RDRINEKMRA LQELIPHCNK  360
TDKASMLDEA IEYLKSLQLQ VQATCIQMMW MGSGIAAPPA VMFPGVHQYL SRMGVGMGPA  420
AAMPSMPRLP FMAAPQPVVP PNAQVNPVPG YRGHHHMPAA VGMAEPYGHY LGVNHLQPPP  480
SQHYAQGVGY YPPPLGAKAV QQQAPELHHV PGPGASMPAG AGAAAPGVLL PESAPSRGPG  540
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1336341ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.90720.0leaf| shoot
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G158900.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9566450.0EU956645.1 Zea mays clone 1569257 PIL5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021306928.10.0transcription factor PIF1 isoform X1
TrEMBLA0A1Z5S5S30.0A0A1Z5S5S3_SORBI; Uncharacterized protein
STRINGSb01g013843.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31073677
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.25e-34phytochrome interacting factor 3