PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G141100.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 373aa    MW: 40371.1 Da    PI: 7.3093
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G141100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.61.2e-14185231455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            h ++Er+RR++iN++f eL +++P +     kK++Ka+iL  A++Y+k+Lq
  Sobic.001G141100.1.p 185 DHIIAERKRREKINQRFIELSTVIPGL-----KKMDKATILLDATRYLKELQ 231
                           699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.942181230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-12185231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-17185243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-18185242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.54E-15186235No hitNo description
SMARTSM003531.8E-15187236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MAIRTLLSQY LSKSFAKLHT HNPPRYSSEI RLLTGDMEDS SLFMQWAMDT LQHENPESAA  60
GVAAVHGDFS EATFPSLKAL REASQAAEMV QELIAGADVV RQAPNSWNSG DTTANCNVPA  120
AGWNFGGATS TQQPGRNGMM AEAPVMATRS RLPPPPPDLV YGPPPITRRA GLKSLGSMAA  180
SYAQDHIIAE RKRREKINQR FIELSTVIPG LKKMDKATIL LDATRYLKEL QEKLKDLEAG  240
KSTDTETLVL VKKPCLHAAA AWDGDGGSSL PAPPAGTPTA RKRLPEIEVR FSESEKSVVM  300
RVHCENRKGV VVNVLTEVEE LHLRSIHANV MPFTACTCII TITAKVEEGF TVTTEEIVGR  360
LNSALSLHAA PA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189194ERKRRE
2190195RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G141100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0399631e-48BT039963.1 Zea mays full-length cDNA clone ZM_BFc0054N17 mRNA, complete cds.
GenBankKJ7267861e-48KJ726786.1 Zea mays clone pUT2107 bHLH transcription factor (bHLH71) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466688.20.0transcription factor bHLH18
TrEMBLC5WQ910.0C5WQ91_SORBI; Uncharacterized protein
STRINGSb01g012280.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Representative plantOGRP1948822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-23bHLH family protein