PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G140900.4.p
Common NameSb01g012260, SORBIDRAFT_01g012260
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 372aa    MW: 39385.2 Da    PI: 5.4462
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G140900.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH474.5e-15182228455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            h ++Er+RR++iN++f eL +++P +     kK++Ka+iL  A++Y+k+Lq
  Sobic.001G140900.4.p 182 DHIIAERKRREKINQRFIELSTVIPGL-----KKMDKATILSDATKYVKELQ 228
                           699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.05178227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-12182228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-18182237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-17182238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.49E-15183232No hitNo description
SMARTSM003533.3E-16184233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516719.706299371IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MEDSSIFLQW AMNTLRHEQP AAAAVNDDCS SEATFPSLQA LREASHAAEM VQELIEEAPA  60
NSWSSGDTTD GSSGGGNNNN NSAPAAAAAA AAMDHDVVWP ASKTTSPVSR PTLSRSSSVT  120
NPPLSWNFSA AASAQLGSDG GMLPEFAHKR ALPLDQVYGS PPARRAGLRS PAGSMSAPYA  180
QDHIIAERKR REKINQRFIE LSTVIPGLKK MDKATILSDA TKYVKELQEK LKDLEAGGSN  240
GRSRSIETVV LVKRPCLHAA AAAPDDDGSP LSASSGTSPA ERKTQLPEIE ARFSEKSVMV  300
RIHCEDGKGV AVKVLAEVEE LHLSIIHANV LPFAEGTLII TITAKVEEGF TVTAEEIVGR  360
LNSIWTSAQP A*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186191ERKRRE
2187192RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G140900.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0399630.0BT039963.1 Zea mays full-length cDNA clone ZM_BFc0054N17 mRNA, complete cds.
GenBankKJ7267860.0KJ726786.1 Zea mays clone pUT2107 bHLH transcription factor (bHLH71) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466687.20.0transcription factor bHLH18
TrEMBLA0A1B6QIX20.0A0A1B6QIX2_SORBI; Uncharacterized protein
STRINGSb01g012260.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-35bHLH family protein