PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.001G140900.3.p | ||||||||
Common Name | Sb01g012260, SORBIDRAFT_01g012260 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bHLH | ||||||||
Protein Properties | Length: 372aa MW: 39385.2 Da PI: 5.4462 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 47 | 4.5e-15 | 182 | 228 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR++iN++f eL +++P + kK++Ka+iL A++Y+k+Lq Sobic.001G140900.3.p 182 DHIIAERKRREKINQRFIELSTVIPGL-----KKMDKATILSDATKYVKELQ 228 699************************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.05 | 178 | 227 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-12 | 182 | 228 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-18 | 182 | 237 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.88E-17 | 182 | 238 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.49E-15 | 183 | 232 | No hit | No description |
SMART | SM00353 | 3.3E-16 | 184 | 233 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS51671 | 9.706 | 299 | 371 | IPR002912 | ACT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MEDSSIFLQW AMNTLRHEQP AAAAVNDDCS SEATFPSLQA LREASHAAEM VQELIEEAPA 60 NSWSSGDTTD GSSGGGNNNN NSAPAAAAAA AAMDHDVVWP ASKTTSPVSR PTLSRSSSVT 120 NPPLSWNFSA AASAQLGSDG GMLPEFAHKR ALPLDQVYGS PPARRAGLRS PAGSMSAPYA 180 QDHIIAERKR REKINQRFIE LSTVIPGLKK MDKATILSDA TKYVKELQEK LKDLEAGGSN 240 GRSRSIETVV LVKRPCLHAA AAAPDDDGSP LSASSGTSPA ERKTQLPEIE ARFSEKSVMV 300 RIHCEDGKGV AVKVLAEVEE LHLSIIHANV LPFAEGTLII TITAKVEEGF TVTAEEIVGR 360 LNSIWTSAQP A* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 186 | 191 | ERKRRE |
2 | 187 | 192 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.001G140900.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT039963 | 0.0 | BT039963.1 Zea mays full-length cDNA clone ZM_BFc0054N17 mRNA, complete cds. | |||
GenBank | KJ726786 | 0.0 | KJ726786.1 Zea mays clone pUT2107 bHLH transcription factor (bHLH71) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002466687.2 | 0.0 | transcription factor bHLH18 | ||||
TrEMBL | A0A1B6QIX2 | 0.0 | A0A1B6QIX2_SORBI; Uncharacterized protein | ||||
STRING | Sb01g012260.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP927 | 31 | 143 | Representative plant | OGRP11913 | 3 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 3e-35 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.001G140900.3.p |
Entrez Gene | 8054189 |