PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G140800.1.p
Common NameSb01g012250, SORBIDRAFT_01g012250
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 386aa    MW: 39673.5 Da    PI: 5.6852
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G140800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.51.4e-14200246455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            h  +Er+RR++iN++f eL  ++P +     kK++Ka+iL  A++Y+k+Lq
  Sobic.001G140800.1.p 200 DHIVAERKRREKINQRFIELSAVIPCL-----KKMDKATILSDATRYVKELQ 246
                           6999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.948196245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-18200259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-17200261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-12200246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.96E-16201250No hitNo description
SMARTSM003531.6E-15202251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MEDSSQFLQW ALSTLQHDDL PPATPAATAA YDDNGCNTAA FSSIPALGYS AASVNSMVPG  60
EPPAREGHRA AAATNSWSSA DTDSGSGGGG TASVTAAQRD AWSPSSQQNL VNCATPRSSG  120
SSGANQQVGW DFNSASAQLI KEAQANSAAA AAAAARAESN GGGGVPVPQP QMVHNNGPPP  180
TKRASAKMSA PSSSPPCSQD HIVAERKRRE KINQRFIELS AVIPCLKKMD KATILSDATR  240
YVKELQEKLK ALQEDGRGME SAVLVKKPRI AAPGDDEDGG APSPSSCATA GAAATARNAL  300
PEIEARILDG NVVMLRIHCE DGKGVLVRVL AEVEGLCLSI THTNVMPLSA CILIINIMAK  360
VLEGFNATAD DIVGRLNAVL AGPAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204209ERKRRE
2205210RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G140800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0390040.0BT039004.1 Zea mays full-length cDNA clone ZM_BFb0348L02 mRNA, complete cds.
GenBankKJ7269890.0KJ726989.1 Zea mays clone pUT3690 bHLH transcription factor (bHLH114) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466686.10.0transcription factor NAI1
TrEMBLC5WPR00.0C5WPR0_SORBI; Uncharacterized protein
STRINGSb01g012250.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Representative plantOGRP1694033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.15e-35bHLH family protein