PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G132200.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C3H
Protein Properties Length: 1487aa    MW: 161499 Da    PI: 4.1028
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G132200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.11.9e-1010341056527
                            --SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH    5 lCrffartGtCkyGdrCkFaHgp 27  
                            +Crf++ tG C+yG++C+F+H++
  Sobic.001G132200.1.p 1034 NCRFYMSTGSCSYGSSCHFNHPR 1056
                            7********************96 PP
2zf-CCCH27.84.2e-0910921115427
                            ---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH    4 elCrffartGtCkyGdrCkFaHgp 27  
                            ++C +++r+GtC+yG +C+++H++
  Sobic.001G132200.1.p 1092 RNCTYYMRYGTCRYGKKCCYNHPE 1115
                            79********************96 PP
3zf-CCCH26.51.1e-0812191244227
                            -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHgp 27  
                             +++C+f +r+G C++G++C++ H++
  Sobic.001G132200.1.p 1219 ERPECPFLLRFGNCRFGSSCQYYHPK 1244
                            689*********************96 PP
4zf-CCCH35.51.7e-1112891315127
                            --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH    1 yktelCrffartGtCkyGdrCkFaHgp 27  
                            +++++C+f+ +tG Ck+G++CkF+H++
  Sobic.001G132200.1.p 1289 PGEPECPFYVKTGSCKFGANCKFHHPK 1315
                            5799*********************96 PP
5zf-CCCH25.62.1e-0813581384127
                            --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH    1 yktelCrffartGtCkyGdrCkFaHgp 27  
                            ++++ Cr+++++G Ck+ + C F+H++
  Sobic.001G132200.1.p 1358 PGQPDCRYYMQFGKCKFESACIFNHPK 1384
                            5789*********************96 PP
6zf-CCCH33.66.5e-1113921415427
                            ---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH    4 elCrffartGtCkyGdrCkFaHgp 27  
                            ++C+f+++tG C++G+ C F H++
  Sobic.001G132200.1.p 1392 AECPFYMKTGSCQFGSACEFYHPK 1415
                            58********************96 PP
7zf-CCCH18.92.7e-0614571480427
                            ---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH    4 elCrffartGtCkyGdrCkFaHgp 27  
                             +C+++++ G+Ck+  +CkF+H++
  Sobic.001G132200.1.p 1457 LECPHYMKHGYCKFQMNCKFHHPR 1480
                            58********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.5E-410291056IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.86410291057IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-510331056IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-810341056IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-510351055IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-410881115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.56310881116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-510911116IPR000571Zinc finger, CCCH-type
PfamPF006427.0E-710921115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.90612171245IPR000571Zinc finger, CCCH-type
SMARTSM003560.006712181244IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-612191244IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-612881315IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.9112881316IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-912901315IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-512921316IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-412941314IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-413571384IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.09813571385IPR000571Zinc finger, CCCH-type
PfamPF006428.7E-613591384IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-413881415IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.20613881416IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-813921415IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.6E-413941413IPR000571Zinc finger, CCCH-type
SMARTSM003560.1614531480IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.97214531481IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-514571483IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:0005829Cellular Componentcytosol
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1487 aa     Download sequence    Send to blast
MAGVEDEDEF KDALGAAVPP PCSQSPKPAS KSKPATGGGG GGGGLGRRLF ASIPLPATLS  60
AAIGRFSSPK PPASNVGLGL LLDAGAGLDP SADGPPASYD AAASGGGGSL HMPSFAALQR  120
QHGDDQVAGR GAGAGLEELG LVPAEEEWGT TEDSREKVGL AVDVRSGNRN CFPTRGQEEE  180
GEQCPGEQCP GDELGAAVAQ DQEVVVEQQG GTEDCAAVVE DDSNYSHAAV EQCAGDETRA  240
VKASNDVEVN ERVIKQECAG DILDAAEDGV SVGLQEEENA VVEEQGVDVI SVQDQHEVVE  300
QCAGDQLTTT TDGNAAQDQE VVVEQEGATE WYTALEAVEQ WSDDGSKAGK DGGIVEEEKG  360
VEEEGAVGLL LDAAKDGAPV ESQEEDDLVV AEQNEDDISS QDQHKVAEQS ISDQLRTTTD  420
GNAAQDQEVV LHKDCVTVEP QEENVVVAEH GEDGISVQDQ HKVVEQCSSG QPRTTMDDNA  480
SEGQGVVEQE GAIFYMDATT DDIAVEDQEK LMKESDGDES RATRDENSVE VKDKVVDQEG  540
VVDEYGVFKD GCGAELLKNN VVAVEQVEDG ISLSDEDNMV ELYTSDQLRS TLDDHAAENQ  600
KAVEQEGDIV ERVVTTNRIA GEDQEKEVEQ SAGDESRSTK DENGLEDNEN VDPEDVINIQ  660
GVNNDVSCVE AQEEDVVVVE QGGDDMSAGD EGNAVEQCTN DWLRATMEVN AAEFQELVEQ  720
GGAIFEKGMT AGGITVEDQD KEAEQSAGDE SSVTEGENAV EGNKKVDQED AINRQGTAKE  780
DSGVEPQEEE NVVDPDQGVD GLSVLDEGNV VAQCTSDQLR TTMEDNAAEL REVVEQEGAI  840
FEKGVASHGI TVEDQDKEME QSAGDEARAT KGENAVEDKK VYQEDAIDKQ GATKDCSGVE  900
SQEENMVVPD QGMDGLSVLD EGNVVPQCTS DQLRTTTDNN AAADPEVPEQ EGVGSILGAA  960
KVDIAVEESR EEDIMVAEQV ENGVFVQDQD EAVEQHTSDQ LKTIADNNDV EDQEVHREKI  1020
VLSEGYPQRP GKLNCRFYMS TGSCSYGSSC HFNHPRLKAK LEVSSFPSEQ RNHEVEFLEL  1080
NRVGLPIREG ARNCTYYMRY GTCRYGKKCC YNHPEQVLDV QIHTATGWDD TNLQSSPHSK  1140
KSPEHGTMDD TRFSPEVLPP NIIRMLLPPQ NVPPCTEEKE MRIKKDPDWA SASDDSDGCC  1200
SADSSDGPLC KQEHGGYPER PECPFLLRFG NCRFGSSCQY YHPKDKVSST YHPKDKFQSR  1260
YHPKEKSSRY HPKKEPALSG ELMVYPDRPG EPECPFYVKT GSCKFGANCK FHHPKDIAPS  1320
MQGPASPKRS VAANEHHPAA RTTLQDQMYQ QQKYPERPGQ PDCRYYMQFG KCKFESACIF  1380
NHPKLSSGWH LAECPFYMKT GSCQFGSACE FYHPKVRCPS RGGVIDGTDY GHDFATKSQN  1440
VLQQHEQAIY PERPGELECP HYMKHGYCKF QMNCKFHHPR DRLPKK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G132200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0372680.0BT037268.1 Zea mays full-length cDNA clone ZM_BFb0160O02 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021318825.10.0uncharacterized protein LOC8054148 isoform X1
RefseqXP_021318829.10.0uncharacterized protein LOC8054148 isoform X1
TrEMBLA0A1Z5S5H70.0A0A1Z5S5H7_SORBI; Uncharacterized protein
STRINGSb01g011590.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147291820
Representative plantOGRP1597633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16540.32e-42zinc finger nuclease 3