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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.001G107400.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bHLH | ||||||||
Protein Properties | Length: 347aa MW: 37353.1 Da PI: 6.3197 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.7 | 1.7e-12 | 167 | 214 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h +Er+RR+++ ++f L +++P + kK++Ka++L A++Y+k+Lq Sobic.001G107400.2.p 167 QDHILAERKRREKLSQRFIALSKIVPGL-----KKMDKASVLGDAIKYVKQLQ 214 67999***********************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.809 | 164 | 213 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.1E-10 | 167 | 214 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.07E-17 | 167 | 232 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.0E-17 | 168 | 225 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.60E-13 | 169 | 218 | No hit | No description |
SMART | SM00353 | 6.1E-15 | 170 | 219 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MDEPSFFHQW QSDALLEQYT EQQIAVAFGQ GEVDHAVAAA LSTMPQQQQQ QQPAVAAEHR 60 PRKAAKVNTS WDSCITEQGS PADSSSPTIL SFGGHAAAAF AKPEPHPHQA PSAAAYYGAA 120 AAAAKAPKQE VLDAAALPFP AKRSYDDMAE AANKAPAATT RPASQNQDHI LAERKRREKL 180 SQRFIALSKI VPGLKKMDKA SVLGDAIKYV KQLQDQVKGL EDEARRRPVE AAVLVKKSQL 240 SADDDEGSSC DENFVGTDAS GTLPEIEARV SDRTVLVRIH CENRKGVLIA ALSEIERLGL 300 SIMNTNVLPF TTSSLDITIM AMAGDDFCLS VKDIVKKLNQ AFKSSF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 1e-12 | 168 | 223 | 8 | 63 | Transcription factor MYC2 |
5gnj_B | 1e-12 | 168 | 223 | 8 | 63 | Transcription factor MYC2 |
5gnj_E | 1e-12 | 168 | 223 | 8 | 63 | Transcription factor MYC2 |
5gnj_F | 1e-12 | 168 | 223 | 8 | 63 | Transcription factor MYC2 |
5gnj_G | 1e-12 | 168 | 223 | 8 | 63 | Transcription factor MYC2 |
5gnj_I | 1e-12 | 168 | 223 | 8 | 63 | Transcription factor MYC2 |
5gnj_M | 1e-12 | 168 | 223 | 8 | 63 | Transcription factor MYC2 |
5gnj_N | 1e-12 | 168 | 223 | 8 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 172 | 177 | ERKRRE |
2 | 173 | 178 | RKRREK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.3401 | 0.0 | leaf| ovary| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.001G107400.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT036552 | 0.0 | BT036552.2 Zea mays full-length cDNA clone ZM_BFb0123D23 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021319991.1 | 0.0 | transcription factor bHLH18-like | ||||
Swissprot | Q9T072 | 5e-55 | BH025_ARATH; Transcription factor bHLH25 | ||||
TrEMBL | A0A1B6QIC7 | 0.0 | A0A1B6QIC7_SORBI; Uncharacterized protein | ||||
TrEMBL | A0A1B6QIE7 | 0.0 | A0A1B6QIE7_SORBI; Uncharacterized protein | ||||
STRING | Sb01g009590.2 | 0.0 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 2e-55 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.001G107400.2.p |