PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G095700.1.p
Common NameSb01g008570, SORBIDRAFT_01g008570
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 310aa    MW: 33813.8 Da    PI: 5.8935
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G095700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.84e-08136180554
                           HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           h +rEr+RR+++ ++++ L  l+ ++      + +K +i++ A  YI++L
  Sobic.001G095700.1.p 136 HMMRERQRREKLSQSYADLHALVASR-----SRGDKNSIVQAAAIYIHEL 180
                           889**********************7.....5888889*********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.76E-12131201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.776131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-9135198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.09E-8135185No hitNo description
PfamPF000109.8E-6136180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.0E-5137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MQMDSYNYAS FFHDEAAFYP HVAVPPSSPE LPFGLIASPG EMEPEPPFAP PMPTAFQDYD  60
YPGAAVGVGA GAPFGGPSVH RQVMDALGGD GQREQSMAMA EDGEEEQEQE PRRQRQRQQP  120
AGAAAAAVES SRGFRHMMRE RQRREKLSQS YADLHALVAS RSRGDKNSIV QAAAIYIHEL  180
RGAREQLQRR NEELKARILG HDARQQCVKV QFEVDEPASA IDSMIGALRR LKGMDVRARG  240
IRSNLSGRRL CTEMNVETTI AAGEVEKAVE EALMQEVERK QQQQLGAGSA AAAPGFAGPQ  300
ASSHVQNVF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.73570.0ovary
Functional Description ? help Back to Top
Source Description
UniProtMay act on an initial response of jasmonate-regulated gene expression toward drought tolerance as part of a BHLH148-TIFY11D/JAZ12-COI1A complex. {ECO:0000269|PubMed:21332845}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G095700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), methyl jasmonate (MeJA), drought, cold, salt and wounding. {ECO:0000269|PubMed:21332845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9436470.0EU943647.1 Zea mays clone 1671614 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466482.10.0transcription factor BHLH148
SwissprotQ75KV91e-103BH148_ORYSJ; Transcription factor BHLH148
TrEMBLC5X1970.0C5X197_SORBI; Uncharacterized protein
STRINGSb01g008570.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59403450
Representative plantOGRP97631112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.13e-22bHLH family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]