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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.001G095500.1.p |
Common Name | Sb01g008550, SORBIDRAFT_01g008550 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
WRKY |
Protein Properties |
Length: 407aa MW: 43617.8 Da PI: 10.6866 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.001G095500.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 99 | 2.9e-31 | 341 | 399 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
D+++WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp+++++tYeg+Hnh+
Sobic.001G095500.1.p 341 ADEFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPSMLIVTYEGDHNHN 399
69*************************988****************************7 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 407 aa
Download sequence Send
to blast |
MGPSSIQEME EARRTAVQSC HRVLALLSNP HGQLVPSKDL MAATGEAVAK FGSLTAKLTN 60 SNSNSNGNGL QLQGHARVRK IKKPLPIFDS NLFLESSAVA AAAAATVAKT PSPSPITGLQ 120 LFPRYHQMEG SSSKDPVRIP TQFPKRLLLE NPAAGLEGLP SKAPPVQMVQ PVSVAPPAGT 180 PTPALPAAHL HFLQQNQSYQ RFQLMHQMKI QNEMMKRSNL GDQGGSLSGG GGGKGVNLKF 240 DSSNCTASSS RSFLSSLSME GTLASLDGSR ASRPFQLVSG SQTSSTPEMG LVHRKRCAGR 300 EDGGGRCTTG SRCHCSKKRK LRIRRSIKVP AISNKVADIP ADEFSWRKYG QKPIKGSPHP 360 RGYYKCSSVR GCPARKHVER CVDDPSMLIV TYEGDHNHNR VLAQPA*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: More abundant in apices and young leaf primordia than in fully expanded leaf tissues. {ECO:0000269|PubMed:16243907}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AY940680 | 0.0 | AY940680.1 Zea mays WRKY1 mRNA, complete cds. |
GenBank | BT083993 | 0.0 | BT083993.1 Zea mays full-length cDNA clone ZM_BFb0063A21 mRNA, complete cds. |
GenBank | EU956173 | 0.0 | EU956173.1 Zea mays clone 1558475 WRKY transcription factor 21 mRNA, complete cds. |